TITLE= Energy deposition kernel for 135 keV photons
##########################
:start I/O control:

IRESTART= first         # first    (0) First run for this data set
                        # restart  (1) Restart a previous run
                        # analyze  (3) Just read in the raw data and do the statistical analysis
                        # parallel (5) Combine results from previous parallel runs

STORE DATA ARRAYS= yes  # yes: (0) Store data arrays for re-use
                        # no : (1) don't store them

PRINT OUT EDK FILE= yes # produce energy deposition file
                        # in old kernels' format ?
                        # yes: (0) EDK stored in old format files
                        # no : (1) don't produce EDK files in old format
:stop I/O control:
##########################

##########################
:start Monte Carlo inputs:

NUMBER OF HISTORIES= 999999999 # 

INITIAL RANDOM NO. SEEDS= 1, 5858

IFULL= ENERGY DEPOSITION KERNEL # cavity calculation        (0) calculate dose in cavity regions
                                # energy deposition kernels (1) 
                                # dose calculation          (2) 
                                # dose and edk              (3) 


DOPPLER BROADENING= On # On or Off
                       # On:  Default EGSnrc implementation 
                       # Off: Neglects Doppler broadening 

:stop Monte Carlo inputs:
#########################

##########################
:start geometrical inputs:

 NUMBER OF CONES= 48  # number of cones (individual or by group)
                      # If omitted or ZERO, pure spherical geometry
                      # assumed.

 ANGLES= 3.75         # ANGLES defining the geometry (reals)
                      # No needed in pure spherical geometries.
                      #
                      # For group input there must be as many entries
                      # as for the NUMBER OF CONES, i.e. :
                      # NCON1,NCON2,...,NCONn
                      # DANG1,DANG2,...,DANGn
                      #    
                      # For individual input, ncones must be equal
                      # to the number of entries, i.e.:
                      # ncones
                      # DANG1, DANG2,...,DANGncones

#  NUMBER OF SPHERES = 24  # number of spheres (individual or by group)
                           # For individual inputs as below, number of spheres can be omitted

RADII= 0.01,0.03,0.05,0.08,0.11,0.15,0.2,0.3,0.4,0.6,0.8,1.1,
         1.5,2.0,3.0,4.0,6.0,8.0,10.0,15.0,20.0,30.0,45.0,60.0
		
# RADII= 60.

# Below is radii used by Mackie and Rogers which was scaled above to include lower radii
# RADII= 0.05,0.1,0.15,0.2,0.3,0.4,0.5,0.6,0.8,1.0,  # radii of spheres defining the geometry (reals)
#        1.5,2.0,3.0,4.0,5.0,6.0,8.0,10.0,15.0,20.0, # 
#	30.0,40.0,50.0,60.0                         # For group input there must be as many entries
                                                    # as for the NUMBER OF SPHERES, i.e. :
                                                    # NSPH1,NSPH2,...,NSPHn
                                                    # DRAD1,DRAD2,...,DRADn
 
MEDIA= WaterLiq;                #Media in the problem:
                                #These must match exactly, including case, one
                                #of the media names in the pegs4 data set being
                                #used in the problem.
                                #The maximum length of name is 24 characters
                                #They are automatically left justified on input.

MEDNUM= 1                       # define what medium goes where
                                # use region numbers to define this
                                # (region numbers start at 2 and increase
                                # number from smallest angle to largest angle 
                                # of the conical intervals and innermost radius to
                                # outermost radius) 

                                #Next we specify which media are in
                                #which geometric regions
                                #note that by default all regions contain
                                #medium 1 and which medium to input as 1 should
                                #be selected with this in mind.

START REGION= 2                 #This puts water everywhere
STOP REGION=  1153

:stop geometrical inputs:
#########################

##########################
:start source inputs:

INCIDENT PARTICLE= photon          # electron,photon,positron


INCIDENT ENERGY= monoenergetic     # monoenergetic, spectrum;
INCIDENT KINETIC ENERGY(MEV)= 0.135 # only use for "monoenergetic" 

 #If INCIDENT ENERGY= spectrum:
 # SPEC FILENAME= full name of file containing energy spectrum
 # SPEC IOUTSP= include            # none,include;
                                   # none: no spectrum data in .egslst file
                                   # include: output spectrum data to .egslst file 

SOURCE NUMBER= 0 # 0,1,2
                 # 0: point source AT origin,   emission along Z-axis
                 # 1: point source AT origin,   isotropically radiating in 4Pi
                 # 2: point source NEAR origin, emission along Z-axis

# ZIN= 0.000001  # only for source number 2
                 # source offset on Z-axis
                 # Option used to emulate old way of calculating EDK


:stop source inputs:
#########################

##########################
:start MC transport parameter:

Global ECUT= 0.512   # Electron cutoff for transport
Global PCUT= 0.0010   # Photon   cutoff for transport
Global SMAX= 0.0     # Maximum step size in cm (not needed
                     # unless old PRESTA algorithm used)

ESTEPE= 0.25          # Max fractional continuous energy loss
                     # per step. Use 0.25 unless using
                     # PRESTA-I

XImax= 0.5           # Max first elastic scattering moment
                     # per step. Using default.

Skin depth for BCA= 3 # Distance from a boundary (in elastic
                      # MFP) at which the algorithm will go 
                      # into single scattering mode (using
                      # default here)

Boundary crossing algorithm= EXACT # exact,PRESTA-I;
                                   # exact: cross boundaries in single scattering
                                   #        mode (distance at which to go into
                                   #        single scattering mode determined by
                                   #        "Skin depth for BCA"
                                   # PRESTA-I: cross boundaries with lateral
                                   #           correlations off and force multiple
                                   #           scattering mode

Electron-step algorithm= PRESTA-II # PRESTA-II,PRESTA-I; 
                                   # Determines the algorithm used to take 
                                   # into account lateral and longitudinal 
                                   # correlations in a condensed history 
                                   # step

Spin effects= on                   # Off (default),On;
                                   # Turns off/on spin effects for electron 
                                   # elastic scattering. Spin On is 
                                   # ABSOLUTELY necessary for good 
                                   # backscattering calculations. Will 
                                   # make a difference even in `well 
                                   # conditioned' situations (e.g.  depth 
                                   # dose curves).

Brems angular sampling= KM         # Simple,KM (default);
                                   # Simple: leading term of Koch-Motz
                                   #        dist'n used to determine angle
                                   #        of bremsstrahlung photons 
                                   # KM:  Koch-Motz distribution used to
                                   #     determine angle

Triplet production= Off            # On or Off (default).  
                                   # Turns on/off simulation of triplet production.
                                   # On: Borsellino's first Born approximation is
                                   # used to sample triplet events based on the
                                   # triplet cross-section data.

Brems cross sections= nrc          # BH (default),NIST;
                                   # BH: Bethe-Heitler cross-sections used
                                   # NIST: NIST cross-sections used

Bound Compton scattering= On       # Off (default),On, simple or norej;
                                   # Off: Klein-Nishina used for Compton 
                                   #     scattering
                                   # On: Impulse approximation used for 
                                   #    Compton scattering
                                   # simple: impulse approximation incoherent 
                                   #        scattering function used (i.e., no
                                   #        Doppler broadenning).
                                   # norej: the actual total bound Compton cross 
                                   #        section is used and there are no
                                   #        rejections at run time.							   
Radiative Compton corrections= On  # On or Off (default).
                                   # On: include radiative corrections for Compton
                                   # scattering.

Electron Impact Ionization= On     # Off (default), On, ik, casnati, kolbenstvedt,
                                   # gryzinski, penelope. 
                                   # On or ik: use Kawrakow's theory to derive 
                                   #           EII cross-sections.
                                   # casnati: use the cross-sections of Casnati from
                                   #          $HEN_HOUSE/data/eii_casnati.data.
                                   # Similarly for kolbenstvedt, gryzinski and
                                   # penelope. Case-sensitive except for Off, On or 
                                   # ik options.

Pair angular sampling= Simple      # Off, Simple (default),KM);
                                   # Simple: use leading term of K-M
                                   #        dist'n 
                                   # KM: use complete Koch and Motz dist'n
                                   # Off: angle of pairs is m/E--like old EGS4 

Photoelectron angular sampling= On # Off (default),On;
                                   # Off: Photoelectrons get direction of
                                   #     photon that creates them
                                   # On: Sauter's formula is used

Pair cross sections= NRC            # BH (default) or NRC.  
                                   # BH: use Bethe-Heitler pair production
                                   # cross-sections.  
                                   # NRC: use NRC pair production cross-sections
                                   # (in file $HEN_HOUSE/data/pair_nrc1.data).  

Photon cross sections= xcom        # si (Storm-Israel--the default), 
                                   # epdl (Evaluated Photon Data Library), 
                                   # xcom (NIST Photon Cross Sections Database)
                                   # pegs4 (PEGS4 file photon data)
                                   # User can supply their own cross-section
                                   # data as well. 
                                   # Hence this entry is case-sensitive.

Photon cross-sections output= Off # Off (default) or On.  
                                  #On: file $EGS_HOME/user_code/inputfile.xsections
                                  # is created with the photon cross-section 
                                  # data used.

Compton cross sections= compton_sigma.data # Bound Compton cross-section data. 
                                           # User-supplied bound Compton
                                           # cross-sections in the file
                                           # comp_xsections_compton.data in
                                           # directory $HEN_HOUSE/data/, where
                                           # comp_xsections is the name supplied
                                           # for this input. Uses compton_sigma.data
                                           # by default.

Rayleigh scattering= On            # Off (default),On, custom;
                                   # Off: no coherent scattering
                                   # On: simulates coherent scattering
                                   # custom: user must provide media names
                                   #         for wich form factor (FF) files 
                                   #         will be provided. For the rest 
                                   #         of the media, default atomic FF
                                   #         used.
#
# IF 'custom' Rayleigh option then:
#
#ff media names = A list of media names (must match media found in 
#                 PEGS4 data file) for which the user is going to
#                 provide custom Rayleigh form factor data.
#ff file names = A list of names of files containing the Rayleigh
#                form factor data for the media specified by
#                the ff media names = input above.  Full directory 
#                paths must be given for all files, and for each medium
#                specified, iray_ff_media(i), there must be a 
#                corresponding file name, iray_ff_file(i).  For
#                example files, see the directory 
#                $HEN_HOUSE/data/molecular_form_factors.

Atomic relaxations= On             # Off (default),On;
                                   # On: use correct cross section
                                   #  for p.e. events and shell vacancies
                                   #  for Compton & p.e. events are relaxed
                                   #  via emission of fluorescent X-Rays,
                                   #  Auger and Koster-Cronig electrons
                                   #  electrons

# Atomic relaxations, Rayleigh scattering, Photoelectron angular sampling and
# Bound compton scattering can be turned on/off on a region by region basis.
# Instead of simply "On" or "Off" for these cases put:
#    Atomic relaxations= On (or Off) in Regions 
#    Relaxations start region= 1, 40   #turns relaxations on in regions 1-10 and
#    Relaxations stop region=  10, 99  #40-99
#
#    Rayleigh scattering= On (or Off) in Regions
#    Rayleigh start region= 1, 40
#    Rayleigh stop region= 10, 99
#
#    Photoelectron angular sampling= On (or Off) in Regions
#    PE sampling start region= 1, 40
#    PE sampling stop region= 10, 99
#
#    Bound Compton scattering= On (or Off) in Regions
#    Bound Compton start region= 1, 40
#    Bound Compton stop region= 10, 99 

#ECUT, PCUT and SMAX can also be set on a region-by-region basis. 
#
#Set XXXX=              f_value1, f_value2, ...
#Set XXXX start region= i_value1, i_value2, ...
#Set XXXX stop region=  j_value1, j_value2, ...
#
#where XXXX is ECUT, PCUT or SMAX ,
#f_value1, f_value2,... are the desired values for XXXX
#and i_value_i and j_value_i are the start and
#stop regions.
Set PCUT= 0
Set PCUT start region= 1
Set PCUT stop region= 1
Set ECUT=             0
Set ECUT start region=  1
Set ECUT stop region= 1
Set SMAX= 0
Set SMAX start region= 1
Set SMAX stop region= 1

:stop MC transport parameter:
#########################

##########################
:start variance reduction:

 ELECTRON RANGE REJECTION= on #Off,On;
                              #On: if charged particle energy is below ESAVEIN
                              #    and it cannot get out of current region 
                              #    with energy > ECUT, the particle is 
                              #    terminated 
 ESAVEIN= 0.005               #Energy below which range rejection is 
                              #considered 

 EXPONENTIAL TRANSFORM C= 0.0000 # parameter for pathlength biasing 
                                 # <0 for path length shortening 
                                 #    (useful for surface problems)
                                 # >0 for path length increase 
                                 #    (useful for shielding problems)
                                 # if 0.0, no biasing done

 PHOTON FORCING= On           #Off (default),On;
                              #On: force photons to interact in geometry
 START FORCING= 1	      #Start forcing at this interaction number
 STOP FORCING AFTER= 1	      #Number of photon interactions after which
                              #to stop forcing photon interactions

:stop variance reduction:
#########################

 #########################
 :start plot control:

 PLOTTING= histogram            #Off: do not create plot files
                                #histogram:  create histogram plots  
                                #point:      create xy plots  
 PLOT RADIAL REGION IX= 1,12,24     #Indices of spheres for which to plot depth-
                                #dose data (0 for no depth-dose plots)
 PLOT CONICAL REGION IC= 1,24,48    #Indices of cones for which to plot dose vs
                                #radius data (0 for no dose vs radius plots)

 :stop plot control:
 ########################