WiscPlan/WiscPlanPhotonkV125/matlab_frontend/dicomrt/dicomrt_loadvoi.m

function [cellVOI] = dicomrt_loadvoi(rtstruct_filename)
% dicomrt_loadvoi(rtstruct_filename)
%
% Load Volumes Of Interests (VOIs) from dicom-rt export file.
%
% A=dicomrt_dvhcal('rtstruct_filename') load into A the VOIs
% extracted from the file 'rtstruct_filename'
%
% VOIs are stored in a cell array with the following structure:
%
%  -----------------------------
%  | [OAR 1] | [xyz contour 1] |
%  |         -------------------
%  |         | [xyz contour 2] |
%  |         -------------------
%  |         |     ...         |
%  |         -------------------
%  |         | [xyz contour n] |
%  -----------------------------
%  |   ...   |     ...         |
%  -----------------------------
%  | [OAR n] | [xyz contour 1] |
%  |         -------------------
%  |         | [xyz contour 2] |
%  |         -------------------
%  |         |     ...         |
%  |         -------------------
%  |         | [xyz contour n] |
%  -----------------------------
%
%
% See also dicomrt_loaddose, dicomrt_loadct, dicomrt_dvhcal
%
% Copyright (C) 2002 Emiliano Spezi (emiliano.spezi@physics.org)

% Get info file

dictFlg = checkDictUse;
if dictFlg
    rtstruct=dicominfo(rtstruct_filename,'dictionary', 'ES - IPT4.1CompatibleDictionary.mat');
else
    rtstruct=dicominfo(rtstruct_filename);
end


%rtstruct=rtstruct_filename;
% Get number of VOIs
ROIContourSequence=fieldnames(rtstruct.ROIContourSequence);

% Define cell array
VOI=cell(size(ROIContourSequence,1),2);

% Progress bar
h = waitbar(0,['Loading progress:']);
set(h,'Name','dicomrt_loadvoi: loading RTSTRUCT objects');

for i=1:size(ROIContourSequence,1) % for i=1:(number of VOIs) ...
    voilabel=getfield(rtstruct.StructureSetROISequence,char(ROIContourSequence(i)),'ROIName');
    VOI{i,1}=voilabel; % get VOI's name

    try
        ncont_temp=fieldnames(getfield(rtstruct.ROIContourSequence,char(ROIContourSequence(i)), ...
            'ContourSequence')); % get contour list per each VOI (temporary variable)
    catch
        warning(['ContourSequence not found for ROI: ', voilabel]);
        ncont_temp = [];
    end

    switch isempty(ncont_temp)
        case 0
            for j=1:size(ncont_temp,1) % for j=1:(number of contours) ...
                if j==1
                    VOI{i,2}=cell(size(ncont_temp,1),1);
                end
                try
                    NumberOfContourPoints=getfield(rtstruct.ROIContourSequence,char(ROIContourSequence(i)), ...
                        'ContourSequence', char(ncont_temp(j)),'NumberOfContourPoints');
                    ContourData=getfield(rtstruct.ROIContourSequence,char(ROIContourSequence(i)), ...
                        'ContourSequence',char(ncont_temp(j)),'ContourData');
                    x=dicomrt_mmdigit(ContourData(1:3:NumberOfContourPoints*3)*0.1,7);
                    y=dicomrt_mmdigit(ContourData(2:3:NumberOfContourPoints*3)*0.1,7);
                    z=dicomrt_mmdigit(ContourData(3:3:NumberOfContourPoints*3)*0.1,7);
                    VOI{i,2}{j,1}=cat(2,x,y,z); % this is the same as VOI{i,2}{j,1}=[x,y,z];
                end
            end
        case 1
            % set dummy values. This will be deleted later dugin the import
            NumberOfContourPoints=1;
            ContourData=[0,0,0];
            x=0;
            y=0;
            z=0;
            VOI{i,2}{1,1}=cat(2,x,y,z);
    end
    waitbar(i/size(ROIContourSequence,1),h);
    ncont_temp=[];
end
% VOI cell generation complete
% Store VOI in a cell array
cellVOI=cell(3,1);
cellVOI{1,1}=rtstruct;
cellVOI{2,1}=VOI;
cellVOI{3,1}=[];
% Close progress bar
close(h);