

@article{Lopci2022Guidelines,
  author  = {Lopci, Emanuele and Hicks, Rodney J. and Dimitrakopoulou-Strauss, Antonia and Dercle, Laurent and Iravani, Ashkan and others},
  title   = {Joint {EANM}/{SNMMI}/{ANZSNM} practice guidelines/procedure standards on recommended use of [{\textsuperscript{18}F}]FDG {PET/CT} imaging during immunomodulatory treatments in patients with solid tumors version 1.0},
  journal = {European Journal of Nuclear Medicine and Molecular Imaging},
  year    = {2022},
  volume  = {49},
  number  = {7},
  pages   = {2323--2341},
  doi     = {10.1007/s00259-022-05780-2}
}

@book{Hosmer2013,
  author    = {Hosmer, David W. and Lemeshow, Stanley and Sturdivant, Rodney X.},
  title     = {Applied Logistic Regression},
  year      = {2013},
  edition   = {3},
  publisher = {Wiley},
  address   = {Hoboken, NJ}
}

@book{Agresti2013,
  author    = {Agresti, Alan},
  title     = {Categorical Data Analysis},
  year      = {2013},
  edition   = {3},
  publisher = {Wiley},
  address   = {Hoboken, NJ}
}

@book{Nocedal2006,
  author    = {Nocedal, Jorge and Wright, Stephen J.},
  title     = {Numerical Optimization},
  year      = {2006},
  edition   = {2},
  publisher = {Springer},
  address   = {New York}
}

@incollection{NeweyMcFadden1994,
  author    = {Newey, Whitney K. and McFadden, Daniel},
  title     = {Large Sample Estimation and Hypothesis Testing},
  booktitle = {Handbook of Econometrics},
  editor    = {Engle, Robert F. and McFadden, Daniel L.},
  volume    = {4},
  pages     = {2111--2245},
  year      = {1994},
  publisher = {Elsevier}
}

@book{LehmannCasella2004,
  author    = {Lehmann, Erich L. and Casella, George},
  title     = {Theory of Point Estimation},
  year      = {2004},
  edition   = {2},
  publisher = {Springer},
  address   = {New York}
}

@book{EfronTibshirani1994,
  author    = {Efron, Bradley and Tibshirani, Robert J.},
  title     = {An Introduction to the Bootstrap},
  year      = {1994},
  publisher = {Chapman and Hall/CRC},
  address   = {New York}
}

@article{Efron1979,
  author  = {Efron, Bradley},
  title   = {Bootstrap methods: another look at the jackknife},
  journal = {The Annals of Statistics},
  year    = {1979},
  volume  = {7},
  number  = {1},
  pages   = {1--26},
  doi     = {10.1214/aos/1176344552}
}

@book{Bishop2006,
  author    = {Bishop, Christopher M.},
  title     = {Pattern Recognition and Machine Learning},
  year      = {2006},
  publisher = {Springer},
  address   = {New York}
}

@book{Gelman2017,
  author    = {Gelman, Andrew and Carlin, John B. and Stern, Hal S. and Dunson, David B. and Vehtari, Aki and Rubin, Donald B.},
  title     = {Bayesian Data Analysis},
  edition   = {3},
  year      = {2017},
  publisher = {CRC Press},
  address   = {Boca Raton, FL}
}

@incollection{McFadden1974,
  author    = {McFadden, Daniel},
  title     = {Conditional Logit Analysis of Qualitative Choice Behavior},
  booktitle = {Frontiers in Econometrics},
  editor    = {Zarembka, Paul},
  pages     = {105--142},
  year      = {1974},
  publisher = {Academic Press},
  address   = {New York}
}

@techreport{NISTTN2119,
  author       = {Lu, Zhan-Qian John},
  title        = {Estimating Instrument Performance: with Confidence Intervals and Confidence Bounds},
  institution  = {National Institute of Standards and Technology (NIST)},
  type         = {NIST Technical Note},
  number       = {2119},
  year         = {2020},
  month        = sep,
  doi          = {10.6028/NIST.TN.2119}
}

@techreport{JCGM100_2008,
  author       = {{Joint Committee for Guides in Metrology (JCGM)}},
  title        = {Evaluation of measurement data --- Guide to the expression of uncertainty in measurement},
  institution  = {BIPM and IEC and IFCC and ILAC and ISO and IUPAC and IUPAP and OIML},
  number       = {JCGM 100:2008},
  year         = {2008},
  doi          = {10.59161/JCGM100-2008E}
}

@article{DerKiureghianDitlevsen2009,
  author  = {Der Kiureghian, Armen and Ditlevsen, Ove},
  title   = {Aleatory or epistemic? Does it matter?},
  journal = {Structural Safety},
  year    = {2009},
  volume  = {31},
  number  = {2},
  pages   = {105--112},
  doi     = {10.1016/j.strusafe.2008.06.020}
}

@inproceedings{KendallGal2017,
  author    = {Kendall, Alex and Gal, Yarin},
  title     = {What Uncertainties Do We Need in {Bayesian} Deep Learning for Computer Vision?},
  booktitle = {Advances in Neural Information Processing Systems},
  year      = {2017},
  eprint    = {1703.04977},
  archivePrefix = {arXiv}
}

@misc{Nguyen2020Guide,
  author       = {Nguyen, Thanh-Tung and others},
  title        = {A Guide to Data Transformation},
  howpublished = {arXiv preprint},
  year         = {2020},
  note         = {TODO: replace with correct arXiv ID or published source}
}

@article{BoxCox1964,
  author  = {Box, G. E. P. and Cox, D. R.},
  title   = {An Analysis of Transformations},
  journal = {Journal of the Royal Statistical Society: Series B (Methodological)},
  year    = {1964},
  volume  = {26},
  number  = {2},
  pages   = {211--252}
}

@book{Soize2017UQ,
  author    = {Soize, Christian},
  title     = {Uncertainty Quantification: An Accelerated Course with Advanced Applications in Computational Engineering},
  publisher = {Springer},
  year      = {2017},
  doi       = {10.1007/978-3-319-54339-0}
}

@article{KingZeng2001,
  author  = {King, Gary and Zeng, Langche},
  title   = {Logistic Regression in Rare Events Data},
  journal = {Political Analysis},
  year    = {2001},
  volume  = {9},
  number  = {2},
  pages   = {137--163},
  doi     = {10.1093/oxfordjournals.pan.a004868}
}

@article{HeinzeSchemper2002,
  author  = {Heinze, Georg and Schemper, Michael},
  title   = {A solution to the problem of separation in logistic regression},
  journal = {Statistics in Medicine},
  year    = {2002},
  volume  = {21},
  number  = {16},
  pages   = {2409--2419},
  doi     = {10.1002/sim.1047}
}

@article{Ghosh2018,
  author  = {Ghosh, Moumita and others},
  title   = {Weak identifiability in Bayesian models: issues and solutions},
  journal = {Bayesian Analysis},
  year    = {2018},
  volume  = {13},
  number  = {2},
  pages   = {345--374},
  doi     = {10.1214/17-BA1085}
}

@article{Ramsay1988,
  author  = {Ramsay, James O.},
  title   = {Monotone Regression Splines in Action},
  journal = {Statistical Science},
  year    = {1988},
  volume  = {3},
  number  = {4},
  pages   = {425--461},
  doi     = {10.1214/ss/1177012761}
}
@article{PyaWood2015,
  author  = {Pya, Natalya and Wood, Simon N.},
  title   = {Shape constrained additive models},
  journal = {Statistics and Computing},
  year    = {2015},
  volume  = {25},
  pages   = {543--559},
  doi     = {10.1007/s11222-013-9448-7}
}


@article{OConnor2017,
  author  = {O'Connor, John P. B. and others},
  title   = {Imaging biomarker roadmap for cancer studies},
  journal = {Nature Reviews Clinical Oncology},
  year    = {2017},
  volume  = {14},
  pages   = {169--186},
  doi     = {10.1038/nrclinonc.2016.162}
}

@article{Thrall2018,
  author  = {Thrall, James H. and others},
  title   = {Imaging biomarkers in oncology: current status and future perspectives},
  journal = {Radiology},
  year    = {2018},
  volume  = {287},
  number  = {2},
  pages   = {313--328},
  doi     = {10.1148/radiol.2018170191}
}

@article{Greenland2016,
  author  = {Greenland, S.},
  title   = {Doubly robust estimation of causal effects},
  journal = {Epidemiology},
  year    = {2016},
  volume  = {27},
  number  = {1},
  pages   = {1--10},
  doi     = {10.1097/EDE.0000000000000357}
}

% -------------------------
% DUPLICATE-KEY FIXES BELOW
% (all kept, only keys changed)
% -------------------------

@book{HosmerLemeshow2000,
  author    = {David W. Hosmer and Stanley Lemeshow},
  title     = {Applied Logistic Regression},
  year      = {2000},
  publisher = {Wiley}
}

@book{HosmerLemeshow2000_dup1,
  author    = {Hosmer, David W. and Lemeshow, Stanley and Sturdivant, Rodney X.},
  title     = {Applied Logistic Regression},
  year      = {2000},
  edition   = {3},
  publisher = {Wiley},
  address   = {Hoboken, NJ}
}

@book{HosmerLemeshow2000_dup2,
  author    = {David W. Hosmer and Stanley Lemeshow},
  title     = {Applied Logistic Regression},
  year      = {2000},
  publisher = {Wiley}
}

@book{Gelman2013,
  author    = {Gelman, Andrew and Carlin, John B. and Stern, Hal S. and Dunson, David B. and Vehtari, Aki and Rubin, Donald B.},
  title     = {Bayesian Data Analysis},
  edition   = {3},
  year      = {2013},
  publisher = {CRC Press},
  address   = {Boca Raton, FL}
}

@book{Gelman2013_dup1,
  author    = {Gelman, Andrew and Carlin, John B. and Stern, Hal S. and Dunson, David B. and Vehtari, Aki and Rubin, Donald B.},
  title     = {Bayesian Data Analysis},
  edition   = {3},
  year      = {2013},
  publisher = {CRC Press},
  address   = {Boca Raton, FL}
}

@article{GhoshEtAl2018,
  author  = {Ghosh, Moumita and others},
  title   = {Weak identifiability in Bayesian models: issues and solutions},
  journal = {Bayesian Analysis},
  year    = {2018},
  volume  = {13},
  number  = {2},
  pages   = {345--374},
  doi     = {10.1214/17-BA1085}
}

@article{GhoshEtAl2018_dup1,
  author  = {Ghosh, Moumita and others},
  title   = {Weak identifiability in Bayesian models: issues and solutions},
  journal = {Bayesian Analysis},
  year    = {2018},
  volume  = {13},
  number  = {2},
  pages   = {345--374},
  doi     = {10.1214/17-BA1085}
}

@book{Steyerberg2019,
  author    = {Steyerberg, Ewout W.},
  title     = {Clinical Prediction Models: A Practical Approach to Development, Validation, and Updating},
  year      = {2019},
  publisher = {Springer},
  address   = {New York}
}

@book{Steyerberg2019_dup1,
  author    = {Steyerberg, Ewout W.},
  title     = {Clinical Prediction Models: A Practical Approach to Development, Validation, and Updating},
  year      = {2019},
  publisher = {Springer},
  address   = {New York}
}

@book{Harrell2015,
  author    = {Harrell, Frank E.},
  title     = {Regression Modeling Strategies: With Applications to Linear Models, Logistic and Ordinal Regression, and Survival Analysis},
  year      = {2015},
  publisher = {Springer},
  address   = {New York}
}

@book{Harrell2015_dup1,
  author    = {Harrell, Frank E.},
  title     = {Regression Modeling Strategies: With Applications to Linear Models, Logistic and Ordinal Regression, and Survival Analysis},
  year      = {2015},
  publisher = {Springer},
  address   = {New York}
}

@book{Carroll2006,
  author    = {Carroll, Raymond J. and Ruppert, David and Stefanski, Leonard A.},
  title     = {Measurement Error in Nonlinear Models: A Modern Perspective},
  year      = {2006},
  publisher = {CRC Press},
  address   = {Boca Raton, FL}
}

@book{Carroll2006_dup1,
  author    = {Carroll, Raymond J. and Ruppert, David and Stefanski, Leonard A.},
  title     = {Measurement Error in Nonlinear Models: A Modern Perspective},
  year      = {2006},
  publisher = {CRC Press},
  address   = {Boca Raton, FL}
}

@article{Obuchowski2015,
  author  = {Obuchowski, Nancy A. and others},
  title   = {Statistical Methods in Diagnostic Medicine},
  journal = {Wiley},
  year    = {2015},
  volume  = {2},
  pages   = {223--244},
  doi     = {10.1002/9781118647192}
}

@article{Obuchowski2015_dup1,
  author  = {Obuchowski, Nancy A. and others},
  title   = {Statistical Methods in Diagnostic Medicine},
  journal = {Wiley},
  year    = {2015},
  volume  = {2},
  pages   = {223--244},
  doi     = {10.1002/9781118647192}
}

@book{Saltelli2008,
  author    = {Saltelli, Andrea and Chan, Kit and Scott, Marco},
  title     = {Sensitivity Analysis in Practice: A Guide to Assessing Scientific Models},
  year      = {2008},
  publisher = {Wiley},
  address   = {New York}
}

@book{Saltelli2008_dup1,
  author    = {Saltelli, Andrea and Chan, Kit and Scott, Marco},
  title     = {Sensitivity Analysis in Practice: A Guide to Assessing Scientific Models},
  year      = {2008},
  publisher = {Wiley},
  address   = {New York}
}

@article{AJR2021,
  author  = {Sheikhbahaei, S. and Marcus, C. V. and Sadaghiani, M. S. and Rowe, S. P. and Pomper, M. G. and Solnes, L. B.},
  title   = {Imaging of Cancer Immunotherapy: Response Assessment Methods, Atypical Response Patterns, and Immune-Related Adverse Events},
  journal = {AJR American Journal of Roentgenology},
  year    = {2022},
  volume  = {218},
  pages   = {940--952},
  doi     = {10.2214/AJR.21.26538}
}

@article{Hribernik2022EJNMMI,
  author  = {Hribernik, Ne{\v{z}}ka and Huff, Daniel T. and Studen, Andrej and Zevnik, Katarina and Klane{\v{c}}ek, {\v{Z}}an and Emamekhoo, Hamid and others},
  title   = {Quantitative imaging biomarkers of immune-related adverse events in immune-checkpoint blockade-treated metastatic melanoma patients: a pilot study},
  journal = {European Journal of Nuclear Medicine and Molecular Imaging},
  year    = {2022},
  volume  = {49},
  pages   = {1857--1869},
  doi     = {10.1007/s00259-021-05650-3}
}

@article{Hribernik2024RadiolOncol,
  author  = {Hribernik, Ne{\v{z}}ka and Strasek, Katja and Huff, Daniel T. and Studen, Andrej and Zevnik, Katarina and {\v{S}}kalic, Katja and others},
  title   = {Role of quantitative imaging biomarkers in an early {FDG-PET/CT} for detection of immune-related adverse events in melanoma patients: a prospective study},
  journal = {Radiology and Oncology},
  year    = {2024},
  volume  = {58},
  number  = {3},
  pages   = {335--347},
  doi     = {10.2478/raon-2024-0045}
}

@article{Isensee2021nnUNet,
  author  = {Isensee, Fabian and Jaeger, Paul F. and Kohl, Simon A. A. and Petersen, Jens and Maier-Hein, Klaus H.},
  title   = {nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation},
  journal = {Nature Methods},
  year    = {2021},
  volume  = {18},
  number  = {2},
  pages   = {203--211},
  doi     = {10.1038/s41592-020-01008-z}
}

@article{Huff2021Histograms,
  author  = {Huff, Daniel T. and Ferjancic, Peter and Nam{\'i}as, Mauro and Emamekhoo, Hamid and Perlman, Scott B. and Jeraj, Robert},
  title   = {Image intensity histograms as imaging biomarkers: application to immune-related colitis},
  journal = {Biomedical Physics \& Engineering Express},
  year    = {2021},
  volume  = {7},
  number  = {6},
  pages   = {065019},
  doi     = {10.1088/2057-1976/ac27c3}
}

@book{Hosmer2013,
  author    = {Hosmer, David W. and Lemeshow, Stanley and Sturdivant, Rodney X.},
  title     = {Applied Logistic Regression},
  year      = {2013},
  edition   = {3},
  publisher = {Wiley},
  address   = {Hoboken, NJ}
}



@article{Efron1979,
  author  = {Efron, Bradley},
  title   = {Bootstrap methods: another look at the jackknife},
  journal = {The Annals of Statistics},
  year    = {1979},
  volume  = {7},
  number  = {1},
  pages   = {1--26},
  doi     = {10.1214/aos/1176344552}
}

@book{Bishop2006,
  author    = {Bishop, Christopher M.},
  title     = {Pattern Recognition and Machine Learning},
  year      = {2006},
  publisher = {Springer},
  address   = {New York}
}

@book{Gelman2017,
  author    = {Gelman, Andrew and Carlin, John B. and Stern, Hal S. and Dunson, David B. and Vehtari, Aki and Rubin, Donald B.},
  title     = {Bayesian Data Analysis},
  edition   = {3},
  year      = {2017},
  publisher = {CRC Press},
  address   = {Boca Raton, FL}
}

@incollection{McFadden1974,
  author    = {McFadden, Daniel},
  title     = {Conditional Logit Analysis of Qualitative Choice Behavior},
  booktitle = {Frontiers in Econometrics},
  editor    = {Zarembka, Paul},
  pages     = {105--142},
  year      = {1974},
  publisher = {Academic Press},
  address   = {New York}
}

@techreport{NISTTN2119,
  author       = {Lu, Zhan-Qian John},
  title        = {Estimating Instrument Performance: with Confidence Intervals and Confidence Bounds},
  institution  = {National Institute of Standards and Technology (NIST)},
  type         = {NIST Technical Note},
  number       = {2119},
  year         = {2020},
  month        = sep,
  doi          = {10.6028/NIST.TN.2119}
}

@article{abdar2021review,
  title   = {A review of uncertainty quantification in deep learning: Techniques, applications and challenges},
  author  = {Abdar, Moloud and Pourpanah, Farhad and Hussain, Sadiq and Rezazadegan, Dana and Liu, Li and Ghavamzadeh, Mohammad and Fieguth, Paul and Cao, Xiaochun and Khosravi, Abbas and Acharya, U Rajendra and others},
  year    = {2021},
  journal = {Information Fusion},
  volume  = {76},
  pages   = {243--297},
  publisher = {Elsevier}
}


@article{aide2022_cancerimaging,
  title   = {PET/CT variants and pitfalls in malignant melanoma},
  author  = {Aide, Nicolas and Iravani, Amir and Prigent, Kevin and Kottler, Diane and Alipour, Ramin and Hicks, Rodney J.},
  year    = {2022},
  journal = {Cancer Imaging},
  volume  = {22},
  number  = {1},
  doi     = {10.1186/s40644-021-00440-4}
}

@article{ajdari2019towards,
  title   = {Towards optimal stopping in radiation therapy},
  author  = {Ajdari, Ali and Niyazi, Maximilian and Nicolay, Nils Henrik and Thieke, Christian and Jeraj, Robert and Bortfeld, Thomas},
  year    = {2019},
  journal = {Radiotherapy and Oncology},
  volume  = {134},
  pages   = {96--100},
  doi     = {10.1016/j.radonc.2019.01.010}
}

@article{ajdari2022personalized,
  title   = {Personalized mid-course FDG-PET based adaptive treatment planning for non-small cell lung cancer using machine learning and optimization},
  author  = {Ajdari, Ali and Liao, Zhongxing and Mohan, Radhe and Wei, Xiong and Bortfeld, Thomas},
  year    = {2022},
  journal = {Physics in Medicine \& Biology},
  volume  = {67},
  number  = {18},
  pages   = {185015},
  doi     = {10.1088/1361-6560/ac88b3}
}

@article{anwar2018,
  title   = {Absolute number of new lesions on 18F-FDG PET/CT is more predictive of clinical response than SUV changes in metastatic melanoma patients receiving ipilimumab},
  author  = {Anwar, Hoda and Sachpekidis, Christos and Winkler, Julia and Kopp-Schneider, Annette and Haberkorn, Uwe and Hassel, Jessica C. and Dimitrakopoulou-Strauss, Antonia},
  year    = {2018},
  month   = {mar},
  journal = {European Journal of Nuclear Medicine and Molecular Imaging},
  volume  = {45},
  number  = {3},
  pages   = {376--383},
  doi     = {10.1007/s00259-017-3870-6},
  issn    = {1619-7089},
  url     = {https://doi.org/10.1007/s00259-017-3870-6}
}

@article{basler2020,
  title   = {Radiomics, Tumor Volume, and Blood Biomarkers for Early Prediction of Pseudoprogression in Patients with Metastatic Melanoma Treated with Immune Checkpoint Inhibition},
  author  = {Basler, Lucas and Gabry\'{s}, Hubert S. and Hogan, Sabrina A. and Pavic, Matea and Bogowicz, Marta and Vuong, Diem and Tanadini-Lang, Stephanie and F\"{o}rster, Robert and Kudura, Ken and Huellner, Martin W. and Dummer, Reinhard and Guckenberger, Matthias and Levesque, Mitchell P.},
  year    = {2020},
  journal = {Clinical Cancer Research},
  volume  = {26},
  number  = {16},
  pages   = {4414--4425},
  doi     = {10.1007/s00259-017-3870-6}
}

@article{baumann2016radiation,
  title   = {Radiation oncology in the era of precision medicine},
  author  = {Baumann, Michael and Krause, Mechthild and Overgaard, Jens and Debus, J{\"u}rgen and Bentzen, S{\o}ren M. and Daartz, Juliane and Richter, Christian and Zips, Daniel and Bortfeld, Thomas},
  year    = {2016},
  journal = {Nature Reviews Cancer},
  volume  = {16},
  number  = {4},
  pages   = {234--249},
  doi     = {10.1038/nrc.2016.18}
}

@article{behler2016perspective,
  title   = {Perspective: Machine learning potentials for atomistic simulations},
  author  = {Behler, J{\"o}rg},
  year    = {2016},
  journal = {The Journal of Chemical Physics},
  volume  = {145},
  number  = {17},
  pages   = {170901}
}

@article{bellazzi2008predictive,
  title   = {Predictive data mining in clinical medicine: current issues and guidelines},
  author  = {Bellazzi, Riccardo and Zupan, Blaz},
  year    = {2008},
  journal = {International Journal of Medical Informatics},
  volume  = {77},
  number  = {2},
  pages   = {81--97}
}

@book{benjamin2014probability,
  title     = {Probability, Statistics, and Decision for Civil Engineers},
  author    = {Benjamin, Jack R. and Cornell, C. Allin},
  year      = {2014},
  publisher = {Courier Corporation}
}

@book{berger1985decision,
  title     = {Statistical Decision Theory and Bayesian Analysis},
  author    = {Berger, James O.},
  year      = {1985},
  edition   = {2},
  publisher = {Springer}
}

@book{bishop2006prml,
  title     = {Pattern Recognition and Machine Learning},
  author    = {Bishop, Christopher M.},
  year      = {2006},
  publisher = {Springer}
}

@article{boateng2019review,
  title   = {A review of the logistic regression model with emphasis on medical research},
  author  = {Boateng, Ernest Yeboah and Abaye, Daniel A.},
  year    = {2019},
  journal = {Journal of Data Analysis and Information Processing},
  volume  = {7},
  number  = {4},
  pages   = {190},
  doi     = {10.4236/jdaip.2019.74012}
}

@article{brier1950verification,
  title   = {Verification of forecasts expressed in terms of probability},
  author  = {Brier, Glenn W.},
  year    = {1950},
  journal = {Monthly Weather Review},
  volume  = {78},
  number  = {1},
  pages   = {1--3}
}

@book{carroll2006measurement,
  title     = {Measurement Error in Nonlinear Models: A Modern Perspective},
  author    = {Carroll, Raymond J. and Ruppert, David and Stefanski, Leonard A. and Crainiceanu, Ciprian M.},
  year      = {2006},
  edition   = {2},
  publisher = {CRC Press}
}

@article{chen2019relationship,
  title   = {Relationship between PD-L1 expression and 18F-FDG uptake in gastric cancer},
  author  = {Chen, Ruohua and Chen, Yumei and Huang, Gang and Liu, Jianjun},
  year    = {2019},
  journal = {Aging (Albany NY)},
  volume  = {11},
  number  = {24},
  pages   = {12270--12279},
  doi     = {10.18632/aging.102567}
}

@article{cheng2022accelerating,
  title   = {Accelerating molecular simulations of soft materials using machine learning},
  author  = {Cheng, Bingqing and Chen, Mojie and Ceriotti, Michele and others},
  year    = {2022},
  journal = {Nature Reviews Materials},
  volume  = {7},
  number  = {11},
  pages   = {822--833}
}

@article{cook2008statistical,
  title   = {Statistical evaluation of prognostic versus diagnostic models: beyond the ROC curve},
  author  = {Cook, Nancy R.},
  year    = {2008},
  journal = {Clinical Chemistry},
  volume  = {54},
  number  = {1},
  pages   = {17--23}
}

@book{cox2018analysis,
  title     = {Analysis of Survival Data},
  author    = {Cox, David Roxbee},
  year      = {2018},
  publisher = {Chapman and Hall/CRC}
}

@article{coz2024overview,
  title   = {An Overview of Regression Models for Adverse Events Analysis},
  author  = {Coz, Elsa and Fauvernier, Mathieu and Maucort-Boulch, Delphine},
  year    = {2024},
  journal = {Drug Safety},
  volume  = {47},
  number  = {3},
  pages   = {205--216}
}

@book{DavisonHinkley1997,
  title      = {Bootstrap Methods and their Application},
  author     = {Davison, A. C. and Hinkley, D. V.},
  year       = {1997},
  publisher  = {Cambridge University Press},
  series     = {Cambridge Series in Statistical and Probabilistic Mathematics},
  place      = {Cambridge}
}

@article{der2009aleatory,
  title   = {Aleatory or epistemic? Does it matter?},
  author  = {Der Kiureghian, Armen and Ditlevsen, Ove},
  year    = {2009},
  journal = {Structural Safety},
  volume  = {31},
  number  = {2},
  pages   = {105--112}
}

@article{dirks2023,
  title   = {Development and Validation of a Predictive Model for Metastatic Melanoma Patients Treated with Pembrolizumab Based on Automated Analysis of Whole-Body [18F]FDG PET/CT Imaging and Clinical Features},
  author  = {Dirks, Ine and Keyaerts, Marleen and Dirven, Iris and Neyns, Bart and Vandemeulebroucke, Jef},
  year    = {2023},
  journal = {Cancers},
  volume  = {15},
  number  = {16},
  doi     = {10.3390/cancers15164083}
}

@book{Efron1982,
  title     = {The Jackknife, the Bootstrap and Other Resampling Plans},
  author    = {Efron, Bradley},
  year      = {1982},
  publisher = {Society for Industrial and Applied Mathematics},
  doi       = {10.1137/1.9781611970319},
  url       = {https://epubs.siam.org/doi/abs/10.1137/1.9781611970319}
}

@book{Efron1994,
  title     = {An Introduction to the Bootstrap},
  author    = {Efron, B. and Tibshirani, R. J.},
  year      = {1994},
  publisher = {Taylor \& Francis},
  series    = {Chapman \& Hall/CRC Monographs on Statistics \& Applied Probability},
  isbn      = {9780412042317}
}

@article{eshghi2018,
  title   = {18F-FDG PET/CT can predict development of thyroiditis due to immunotherapy for lung cancer},
  author  = {Eshghi, Naghmehossadat and Garland, Linda L. and Nia, Emily and Betancourt, Robert and Krupinski, Elizabeth and Kuo, Phillip H.},
  year    = {2018},
  journal = {Journal of Nuclear Medicine Technology},
  volume  = {46},
  number  = {3},
  pages   = {260--264},
  doi     = {10.2967/jnmt.117.204933}
}

@article{faber2005treatment,
  title   = {On the treatment of uncertainties and probabilities in engineering decision analysis},
  author  = {Faber, Michael Havbro},
  year    = {2005},
  month   = {aug},
  journal = {Journal of Offshore Mechanics and Arctic Engineering},
  volume  = {127},
  number  = {3},
  pages   = {243--248},
  doi     = {10.1115/1.1951776}
}

@article{field2007model,
  title   = {Model selection in applied science and engineering: A decision-theoretic approach},
  author  = {Field Jr, R. V. and Grigoriu, Mircea},
  year    = {2007},
  journal = {Journal of Engineering Mechanics},
  volume  = {133},
  number  = {7},
  pages   = {780--791}
}

@article{filippi2022_diagnostics,
  title   = {The Role and Potential of 18F-FDG PET/CT in Malignant Melanoma: Prognostication, Monitoring Response to Targeted and Immunotherapy, and Radiomics},
  author  = {Filippi, Luca and Bianconi, Francesco and Schillaci, Orazio and Spanu, Angela and Palumbo, Barbara},
  year    = {2022},
  journal = {Diagnostics},
  volume  = {12},
  number  = {4},
  doi     = {10.3390/diagnostics12040929}
}

@book{Finney1971,
  author    = {Finney, D. J.},
  title     = {Probit Analysis},
  edition   = {3rd},
  publisher = {Cambridge University Press},
  address   = {Cambridge},
  year      = {1971}
}

@article{Firth1993,
  author  = {Firth, David},
  title   = {Bias Reduction of Maximum Likelihood Estimates},
  journal = {Biometrika},
  year    = {1993},
  volume  = {80},
  number  = {1},
  pages   = {27--38}
}

@article{flaus2021,
  title   = {FDG PET biomarkers for prediction of survival in metastatic melanoma prior to anti-PD1 immunotherapy},
  author  = {Flaus, A. and Habouzit, V. and De Leiris, N. and Vuillez, J. P. and Leccia, M. T. and Perrot, J. L. and Pr\'{e}vot, N. and Cachin, F.},
  year    = {2021},
  month   = {sep},
  journal = {Scientific Reports},
  volume  = {11},
  number  = {1},
  pages   = {18795},
  doi     = {10.1038/s41598-021-98310-3}
}

@article{ForemanMackey2013,
  title   = {emcee: The MCMC Hammer},
  author  = {Foreman-Mackey, Daniel and Hogg, David W. and Lang, Dustin and Goodman, Jonathan},
  year    = {2013},
  month   = {feb},
  journal = {Publications of the Astronomical Society of the Pacific},
  volume  = {125},
  number  = {925},
  pages   = {306},
  doi     = {10.1086/670067},
  url     = {https://dx.doi.org/10.1086/670067}
}

@article{gandy2020_bjr,
  title   = {Immunotherapy-related adverse effects on 18F-FDG PET/CT imaging},
  author  = {Gandy, Nemi and Arshad, Mubarik A. and Wallitt, Kathryn L. and Dubash, Suraiya and Khan, Sameer and Barwick, Tara D.},
  year    = {2020},
  journal = {The British Journal of Radiology},
  volume  = {93},
  number  = {1111},
  pages   = {20190832},
  doi     = {10.1259/bjr.20190832}
}


@article{gigerenzer2011bayesian,
  title   = {Bayesian thinking in medicine},
  author  = {Gigerenzer, Gerd and Gaissmaier, Wolfgang and Kurz-Milcke, Elisabeth and Schwartz, Lisa M. and Woloshin, Steven},
  year    = {2011},
  journal = {BMJ},
  volume  = {342},
  pages   = {d2306},
  doi     = {10.1136/bmj.d2306}
}

@book{graybill1976,
  title     = {Theory and Application of the Linear Model},
  author    = {Graybill, F. A.},
  year      = {1976},
  publisher = {Duxbury Press},
  series    = {Duxbury Classic Series},
  isbn      = {9780878721085}
}

@article{guo2010review,
  title   = {A review of quantitative risk--benefit methodologies for assessing drug safety and efficacy--report of the ISPOR risk--benefit management working group},
  author  = {Guo, Jeff J. and Pandey, Swapnil and Doyle, John and Bian, Boyang and Lis, Yvonne and Raisch, Dennis W.},
  year    = {2010},
  journal = {Value in Health},
  volume  = {13},
  number  = {5},
  pages   = {657--666},
  doi     = {10.1111/j.1524-4733.2010.00725.x}
}

@book{hastie2009elements,
  title     = {The Elements of Statistical Learning},
  author    = {Hastie, Trevor and Tibshirani, Robert and Friedman, Jerome},
  year      = {2009},
  edition   = {2},
  publisher = {Springer}
}

@article{Heinze2002,
  author  = {Heinze, Gerhard and Schemper, Michael},
  title   = {A Solution to the Problem of Separation in Logistic Regression},
  journal = {Statistics in Medicine},
  year    = {2002},
  volume  = {21},
  number  = {16},
  pages   = {2409--2419}
}

@article{hindie2020,
  title   = {Metastatic melanoma: can FDG-PET predict success of anti-PD-1 therapy and help determine when it can be discontinued?},
  author  = {Hindie, Elif},
  year    = {2020},
  journal = {European Journal of Nuclear Medicine and Molecular Imaging},
  volume  = {47},
  pages   = {2227--2232},
  doi     = {10.1007/s00259-020-04826-7}
}

@article{horne2014pretreatment,
  title   = {Pretreatment SUV max predicts progression-free survival in early-stage non-small cell lung cancer treated with stereotactic body radiation therapy},
  author  = {Horne, Zachary D. and Clump, David A. and Vargo, John A. and Shah, Samir and Beriwal, Sushil and Burton, Steven A. and Quinn, Annette E. and Schuchert, Matthew J. and Landreneau, Rodney J. and Christie, Neil A. and others},
  year    = {2014},
  journal = {Radiation Oncology},
  volume  = {9},
  pages   = {1--6},
  doi     = {10.1186/1748-717X-9-41}
}

@book{Hosmer2013,
  author    = {Hosmer, David W. and Lemeshow, Stanley and Sturdivant, Rodney X.},
  title     = {Applied Logistic Regression},
  edition   = {3},
  publisher = {Wiley},
  address   = {Hoboken, NJ},
  year      = {2013}
}

@article{hribernik2020retrospective,
  title   = {Retrospective analysis of treatment-naive Slovenian patients with metastatic melanoma treated with pembrolizumab--real-world experience},
  author  = {Hribernik, Nezka and Boc, Marko and Ocvirk, Janja and Knez-Arbeiter, Jasna and Mesti, Tanja and Ignjatovic, Marija and Rebersek, Martina},
  year    = {2020},
  journal = {Radiology and Oncology},
  volume  = {54},
  number  = {1},
  pages   = {119--127},
  doi     = {10.2478/raon-2020-0003}
}

@article{hribernik2021_ejnmmi,
  title   = {Quantitative imaging biomarkers of immune-related adverse events in immune-checkpoint blockade-treated metastatic melanoma patients: a pilot study},
  author  = {Hribernik, Ne{\v{z}}ka and Huff, Daniel T. and Studen, Andrej and Zevnik, Katarina and Klane{\v{c}}ek, {\v{Z}}an and Emamekhoo, Hamid and {\v{S}}kalic, Katja and Jeraj, Robert and Reber{\v{s}}ek, Martina},
  year    = {2021},
  month   = {Dec},
  journal = {European Journal of Nuclear Medicine and Molecular Imaging},
  volume  = {49},
  number  = {6},
  pages   = {1857--1869}
}

@article{hribernik2024_raon,
  title   = {Role of quantitative imaging biomarkers in an early FDG-PET/CT for detection of immune-related adverse events in melanoma patients: a prospective study},
  author  = {Hribernik, Nezka and Strasek, Katja and Huff, Daniel T. and Studen, Andrej and Zevnik, Katarina and Skalic, Katja and Jeraj, Robert and Rebersek, Martina},
  year    = {2024},
  journal = {Radiology and Oncology},
  volume  = {58},
  number  = {3},
  pages   = {335--347},
  doi     = {10.2478/raon-2024-0045},
  url     = {https://doi.org/10.2478/raon-2024-0045}
}

@article{huang2009parametric,
  title   = {A parametric ROC model-based approach for evaluating the predictiveness of continuous markers in case--control studies},
  author  = {Huang, Ying and Pepe, Margaret S.},
  year    = {2009},
  journal = {Biometrics},
  volume  = {65},
  number  = {4},
  pages   = {1133--1144}
}

@article{Huff2021,
  title   = {Image intensity histograms as imaging biomarkers: application to immune-related colitis},
  author  = {Huff, Daniel T. and Ferjancic, Peter and Nam{\'\i}as, Mauro and Emamekhoo, Hamid and Perlman, Scott B. and Jeraj, Robert},
  year    = {2021},
  month   = {Sep},
  journal = {Biomedical Physics \& Engineering Express},
  volume  = {7},
  number  = {6},
  pages   = {065019},
  doi     = {10.1088/2057-1976/ac27c3}
}

@article{iravani2020_ejnmmi,
  title   = {FDG PET/CT for tumoral and systemic immune response monitoring of advanced melanoma during first-line combination ipilimumab and nivolumab treatment},
  author  = {Iravani, Amir and Osman, Medhat M. and Weppler, Alison M. and Wallace, Roslyn and Galligan, Anna and Lasocki, Arian and Hunter, Morgan O. and Akhurst, Tim and Hofman, Michael S. and Lau, Peter K. H. and Kee, Damien and Au-Yeung, George and Sandhu, Shahneen and Hicks, Rodney J.},
  year    = {2020},
  journal = {European Journal of Nuclear Medicine and Molecular Imaging},
  volume  = {47},
  pages   = {2776--2786},
  doi     = {10.1007/s00259-020-04815-w}
}

@article{janes2008assessing,
  title   = {Assessing the value of risk predictions by using risk stratification tables},
  author  = {Janes, Holly and Pepe, Margaret S. and Gu, Wen},
  year    = {2008},
  journal = {Annals of Internal Medicine},
  volume  = {149},
  number  = {10},
  pages   = {751--760}
}

@book{Johnson1994,
  title     = {Continuous Univariate Distributions, Vol. 1},
  author    = {Johnson, Norman L. and Kotz, Samuel and Balakrishnan, Narayanaswamy},
  year      = {1994},
  publisher = {John Wiley \& Sons, Inc.},
  series    = {Wiley Series in Probability and Statistics},
  isbn      = {978-0-471-58495-7},
  edition   = {2}
}
@book{JohnsonKotzBalakrishnan1995,
  title     = {Continuous Univariate Distributions, Vol. 2},
  author    = {Johnson, Norman L. and Kotz, Samuel and Balakrishnan, Narayanaswamy},
  year      = {1995},
  publisher = {John Wiley \& Sons, Inc.},
  series    = {Wiley Series in Probability and Statistics},
  isbn      = {978-0-471-58494-0},
  edition   = {2}
}

@article{kass1995bayesfactors,
  title   = {Bayes Factors},
  author  = {Kass, Robert E. and Raftery, Adrian E.},
  year    = {1995},
  journal = {Journal of the American Statistical Association},
  volume  = {90},
  number  = {430},
  pages   = {773--795}
}

@article{khoshgoftaar1999logistic,
  title   = {Logistic regression modeling of software quality},
  author  = {Khoshgoftaar, Taghi M. and Allen, Edward B.},
  year    = {1999},
  journal = {International Journal of Reliability, Quality and Safety Engineering},
  volume  = {6},
  number  = {4},
  pages   = {303--317}
}

@article{kim2012development,
  title   = {Development of novel breast cancer recurrence prediction model using support vector machine},
  author  = {Kim, Woojae and Kim, Ku Sang and Lee, Jeong Eon and Noh, Dong-Young and Kim, Sung-Won and Jung, Yong Sik and Park, Man Young and Park, Rae Woong},
  year    = {2012},
  journal = {Journal of Breast Cancer},
  volume  = {15},
  number  = {2},
  pages   = {230--238}
}

@article{kiureghian1989measures,
  title   = {Measures of structural safety under imperfect states of knowledge},
  author  = {Der Kiureghian, Armen},
  year    = {1989},
  journal = {Journal of Structural Engineering},
  volume  = {115},
  number  = {5},
  pages   = {1119--1140}
}

@article{kudura2021,
  title   = {Prediction of Early Response to Immune Checkpoint Inhibition Using FDG-PET/CT in Melanoma Patients},
  author  = {Kudura, Ken and Dimitriou, Florentia and Basler, Lucas and F{\"o}rster, Robert and Mihic-Probst, Daniela and Kutzker, Tim and Dummer, Reinhard and Mangana, Joanna and Burger, Irene A. and Kreissl, Michael C.},
  year    = {2021},
  journal = {Cancers},
  volume  = {13},
  number  = {15},
  doi     = {10.3390/cancers13153830}
}

@article{kurzinger2020structured,
  title   = {Structured benefit--risk evaluation for medicinal products: review of quantitative benefit--risk assessment findings in the literature},
  author  = {K{\"u}rzinger, Marie-Laure and Douarin, Ludivine and Uzun, Ievgeniia and El-Haddad, Chantal and Hurst, William and Juhaeri, Juhaeri and Tcherny-Lessenot, St{\'e}phanie},
  year    = {2020},
  journal = {Therapeutic Advances in Drug Safety},
  volume  = {11},
  pages   = {2042098620976951},
  doi     = {10.1177/2042098620976951}
}

@article{lang2019clinical,
  title   = {Clinical significance of signs of autoimmune colitis in 18F-fluorodeoxyglucose positron emission tomography-computed tomography of 100 stage-IV melanoma patients},
  author  = {Lang, Nina and Dick, Julika and Slynko, Alla and Schulz, Carsten and Dimitrakopoulou-Strauss, Antonia and Sachpekidis, Christos and Enk, Alexander H. and Hassel, Jessica C.},
  year    = {2019},
  journal = {Immunotherapy},
  volume  = {11},
  number  = {8},
  pages   = {667--676},
  doi     = {10.2217/imt-2018-0146}
}

@book{Lehmann2004,
  title     = {Elements of Large-Sample Theory},
  author    = {Lehmann, E. L.},
  year      = {2004},
  publisher = {Springer},
  series    = {Springer Texts in Statistics},
  isbn      = {9780387985954}
}

@article{li2023challenges,
  title   = {Challenges and opportunities in molecular simulation of amorphous polymer materials},
  author  = {Li, Yang and Jiang, Bin},
  year    = {2023},
  journal = {Chinese Journal of Chemical Physics},
  volume  = {36},
  number  = {6},
  pages   = {705--714}
}

@article{lindley2000philosophy,
  title   = {The philosophy of statistics},
  author  = {Lindley, Dennis V.},
  year    = {2000},
  journal = {Journal of the Royal Statistical Society Series D: The Statistician},
  volume  = {49},
  number  = {3},
  pages   = {293--337}
}

@article{lineberry2016recommendations,
  title   = {Recommendations to improve adverse event reporting in clinical trial publications: a joint pharmaceutical industry/journal editor perspective},
  author  = {Lineberry, Neil and Berlin, Jesse A. and Mansi, Bernadette and Glasser, Susan and Berkwits, Michael and Klem, Christian and Bhattacharya, Ananya and Citrome, Leslie and Enck, Robert and Fletcher, John and others},
  year    = {2016},
  journal = {BMJ},
  volume  = {355},
  doi     = {10.1136/bmj.i5078}
}

@book{MacKay2003,
  title     = {Information Theory, Inference, and Learning Algorithms},
  author    = {MacKay, David J. C.},
  year      = {2003},
  publisher = {Cambridge University Press}
}

@misc{MathWorldSigmoid,
  author       = {Weisstein, Eric W.},
  title        = {Sigmoid Function},
  howpublished = {Wolfram MathWorld},
  note         = {Derivative $\sigma'(z)=\sigma(z)[1-\sigma(z)]$; maximum at $\sigma=0.5$},
  url          = {https://mathworld.wolfram.com/SigmoidFunction.html},
  year         = {2002}
}

@book{McCullagh1989,
  author    = {McCullagh, Peter and Nelder, John A.},
  title     = {Generalized Linear Models},
  edition   = {2},
  year      = {1989},
  publisher = {Chapman and Hall},
  address   = {London}
}

@book{McLachlan2000,
  author    = {McLachlan, Geoffrey J. and Peel, David},
  title     = {Finite Mixture Models},
  publisher = {Wiley},
  address   = {New York},
  year      = {2000}
}

@article{murff2003detecting,
  title   = {Detecting adverse events for patient safety research: a review of current methodologies},
  author  = {Murff, Harvey J. and Patel, Vimla L. and Hripcsak, George and Bates, David W.},
  year    = {2003},
  journal = {Journal of Biomedical Informatics},
  volume  = {36},
  number  = {1-2},
  pages   = {131--143}
}

@article{murphy1973new,
  title   = {A new vector partition of the probability score},
  author  = {Murphy, Allan H.},
  year    = {1973},
  journal = {Journal of Applied Meteorology and Climatology},
  volume  = {12},
  number  = {4},
  pages   = {595--600}
}

@book{Murphy2012,
  author    = {Murphy, Kevin P.},
  title     = {Machine Learning: A Probabilistic Perspective},
  publisher = {MIT Press},
  address   = {Cambridge, MA},
  year      = {2012}
}

@article{nadaraja2024_cti,
  title   = {Value of 2-[18F]FDG-PET/CT in identifying immune-related adverse events in patients with melanoma or non-small cell lung cancer: a systematic scoping review},
  author  = {Nadaraja, Sambavy and Helsing, Jonas and Naghavi-Behzad, Mohammad and Land, Lotte H. and Ruhlmann, Christina H. and Gerke, Oke and Hildebrandt, Malene G.},
  year    = {2024},
  journal = {Clinical and Translational Imaging},
  volume  = {12},
  pages   = {187--195},
  doi     = {10.1007/s40336-024-00618-3}
}

@article{nakamura2010suvmax,
  title   = {The SUVmax of 18F-FDG PET correlates with histological grade in endometrial cancer},
  author  = {Nakamura, Keiichiro and Kodama, Junichi and Okumura, Yoshihiro and Hongo, Atsushi and Kanazawa, Susumu and Hiramatsu, Yuji},
  year    = {2010},
  journal = {International Journal of Gynecologic Cancer},
  volume  = {20},
  number  = {1},
  doi     = {10.1111/IGC.0b013e3181c3a288}
}

@incollection{Newey1994,
  title     = {Large sample estimation and hypothesis testing},
  author    = {Newey, Whitney K. and McFadden, Daniel},
  year      = {1994},
  booktitle = {Handbook of Econometrics},
  publisher = {Elsevier},
  volume    = {4},
  pages     = {2111--2245},
  doi       = {10.1016/S1573-4412(05)80005-4},
  url       = {https://www.sciencedirect.com/science/article/pii/S1573441205800054}
}

@book{nguyen2020guide,
  title   = {A Guide on Data Analysis},
  author  = {Nguyen, Mike},
  year    = {2020},
  publisher = {Bookdown},
  url     = {https://bookdown.org/mike/data\_analysis/}
}

@article{nick2007logistic,
  title   = {Logistic regression},
  author  = {Nick, Todd G. and Campbell, Kathleen M.},
  year    = {2007},
  journal = {Topics in Biostatistics},
  pages   = {273--301}
}



@article{pate1996uncertainties,
  title   = {Uncertainties in risk analysis: Six levels of treatment},
  author  = {Pat{\'e}-Cornell, M. Elisabeth},
  year    = {1996},
  journal = {Reliability Engineering \& System Safety},
  volume  = {54},
  number  = {2-3},
  pages   = {95--111}
}

@article{peisen2024os,
  title   = {Pre-treatment 18F-FDG-PET/CT parameters as biomarkers for progression free survival, best overall response and overall survival in metastatic melanoma patients undergoing first-line immunotherapy},
  author  = {Peisen, Felix and Gerken, Annika and Dahm, Isabel and Nikolau, Konstantin and Eigentler, Thomas and Amaral, Teresa and Moltz, Jan H. and Othman, Ahmed E. and Gatidis, Sergios},
  year    = {2024},
  journal = {PLOS ONE},
  volume  = {19},
  number  = {1},
  doi     = {10.1371/journal.pone.0296253}
}

@book{pepe2003statistical,
  title     = {The Statistical Evaluation of Medical Tests for Classification and Prediction},
  author    = {Pepe, Margaret Sullivan},
  year      = {2003},
  publisher = {Oxford University Press}
}

@article{pepe2010potential,
  title   = {The potential of genes and other markers to inform about risk},
  author  = {Pepe, Margaret S. and Gu, Jessie W. and Morris, Daryl E.},
  year    = {2010},
  journal = {Cancer Epidemiology, Biomarkers \& Prevention},
  volume  = {19},
  number  = {3},
  pages   = {655--665}
}

@article{pham2023os,
  title   = {Chemotherapy in Cutaneous Melanoma: Is There Still a Role?},
  author  = {Pham, James P. and Joshua, Anthony M. and Silva, Ines P. and Dummer, Reinhard and Goldinger, Simone M.},
  year    = {2023},
  journal = {Current Oncology Reports},
  volume  = {25},
  number  = {6},
  pages   = {609--621},
  doi     = {10.1007/s11912-023-01385-6}
}

@article{pillans2008clinical,
  title   = {Clinical perspectives in drug safety and adverse drug reactions},
  author  = {Pillans, Peter Ian},
  year    = {2008},
  journal = {Expert Review of Clinical Pharmacology},
  volume  = {1},
  number  = {5},
  pages   = {695--705}
}

@book{Press1992,
  title     = {Numerical Recipes in C},
  author    = {Press, William H. and Teukolsky, Saul A. and Vetterling, William T. and Flannery, Brian P.},
  year      = {1992},
  publisher = {Cambridge University Press},
  address   = {Cambridge, USA},
  edition   = {2}
}

@article{pronzato2009156,
  title   = {Asymptotic Properties of Nonlinear Least Squares Estimates in Stochastic Regression Models Over a Finite Design Space. Application to Self-Tuning Optimisation},
  author  = {Pronzato, Luc},
  year    = {2009},
  journal = {IFAC Proceedings Volumes},
  volume  = {42},
  number  = {10},
  pages   = {156--161},
  doi     = {10.3182/20090706-3-FR-2004.00026},
  note    = {15th IFAC Symposium on System Identification}
}

@article{puzanov2017managing,
  title   = {Managing toxicities associated with immune checkpoint inhibitors: consensus recommendations from the Society for Immunotherapy of Cancer (SITC) Toxicity Management Working Group},
  author  = {Puzanov, I. and Diab, A. and Abdallah, K. and Bingham, C. O. and Brogdon, C. and Dadu, R. and Hamad, L. and Kim, S. and Lacouture, M. E. and LeBoeuf, N. R. and others},
  year    = {2017},
  journal = {Journal for Immunotherapy of Cancer},
  volume  = {5},
  pages   = {95},
  doi     = {10.1186/s40425-017-0300-z}
}

@article{richter2018review,
  title   = {A review of statistical and machine learning methods for modeling cancer risk using structured clinical data},
  author  = {Richter, Aaron N. and Khoshgoftaar, Taghi M.},
  year    = {2018},
  journal = {Artificial Intelligence in Medicine},
  volume  = {90},
  pages   = {1--14}
}

@article{Ritz2015,
  author  = {Ritz, Christian and Streibig, Jens C. and Baty, Francesca and Gerhard, Daniel},
  title   = {Dose-Response Analysis Using R},
  journal = {PLOS ONE},
  year    = {2015},
  volume  = {10},
  number  = {12},
  pages   = {e0146021},
  doi     = {10.1371/journal.pone.0146021}
}

@article{RitzStreibig2005,
  title   = {Bioassay Analysis using R},
  author  = {Ritz, Christian and Streibig, Jens C.},
  year    = {2005},
  journal = {Journal of Statistical Software},
  volume  = {12},
  number  = {5},
  pages   = {1--22},
  doi     = {10.18637/jss.v012.i05}
}

@article{robert2021,
  title   = {Long-term safety of pembrolizumab monotherapy and relationship with clinical outcome: A landmark analysis in patients with advanced melanoma},
  author  = {Robert, Caroline and Hwu, Wen-Jen and Hamid, Omid and Ribas, Antoni and Weber, Jeffrey S. and Daud, Adil I. and Hodi, F. Stephen and Wolchok, Jedd D. and Mitchell, Tara C. and Hersey, Peter and others},
  year    = {2021},
  journal = {European Journal of Cancer},
  volume  = {144},
  pages   = {182--191},
  doi     = {10.1016/j.ejca.2020.11.010}
}

@article{sachpekidis2023,
  title   = {Can physiologic colonic [18F]FDG uptake in PET/CT imaging predict response to immunotherapy in metastatic melanoma?},
  author  = {Sachpekidis, Christos and Stein-Thoeringer, Christoph K. and Kopp-Schneider, Annette and Weru, Vivienn and Dimitrakopoulou-Strauss, Antonia and Hassel, Jessica C.},
  year    = {2023},
  journal = {European Journal of Nuclear Medicine and Molecular Imaging},
  volume  = {50},
  number  = {12},
  pages   = {3709--3722},
  doi     = {10.1007/s00259-023-06327-9}
}

@article{Salvatier2016,
  title   = {Probabilistic programming in Python using {PyMC}3},
  author  = {Salvatier, John and Wiecki, Thomas V. and Fonnesbeck, Christopher},
  year    = {2016},
  month   = {apr},
  journal = {PeerJ Computer Science},
  volume  = {2},
  pages   = {e55},
  doi     = {10.7717/peerj-cs.55},
  url     = {https://doi.org/10.7717/peerj-cs.55}
}

@article{scarpelli2016we,
  title   = {WE-H-207A-03: The Universality of the Lognormal Behavior of [F-18] FLT PET SUV Measurements},
  author  = {Scarpelli, M. and Eickhoff, J. and Perlman, S. and Jeraj, R.},
  year    = {2016},
  journal = {Medical Physics},
  volume  = {43},
  number  = {6Part43},
  pages   = {3845--3846}
}

@article{schober2021logistic,
  title   = {Logistic regression in medical research},
  author  = {Schober, Patrick and Vetter, Thomas R.},
  year    = {2021},
  journal = {Anesthesia \& Analgesia},
  volume  = {132},
  number  = {2},
  pages   = {365--366},
  doi     = {10.1213/ANE.0000000000005247}
}

@article{Sebaugh2011,
  title   = {Guidelines for accurate EC50/IC50 estimation},
  author  = {Sebaugh, Jennifer L.},
  year    = {2011},
  journal = {Pharmaceutical Statistics},
  volume  = {10},
  number  = {2},
  pages   = {128--134},
  doi     = {10.1002/pst.426}
}

@article{shipe2019developing,
  title   = {Developing prediction models for clinical use using logistic regression: an overview},
  author  = {Shipe, Maren E. and Deppen, Stephen A. and Farjah, Farhood and Grogan, Eric L.},
  year    = {2019},
  journal = {Journal of Thoracic Disease},
  volume  = {11},
  number  = {Suppl 4},
  pages   = {S574},
  doi     = {10.21037/jtd.2019.01.25}
}

@book{steyerberg2009,
  title     = {Clinical Prediction Models: a practical approach to development, validation, and updating},
  author    = {Steyerberg, Ewout W.},
  year      = {2009},
  publisher = {Springer}
}

@article{ten2020optimal,
  title   = {Optimal treatment plan adaptation using mid-treatment imaging biomarkers},
  author  = {Ten Eikelder, S. C. M. and Ferjan{\v{c}}i{\v{c}}, P. and Ajdari, A. and Bortfeld, T. and Den Hertog, D. and Jeraj, R.},
  year    = {2020},
  journal = {Physics in Medicine \& Biology},
  volume  = {65},
  number  = {24},
  pages   = {245011},
  doi     = {10.1088/1361-6560/abc130}
}

@article{thie2000_diagnostic,
  title   = {The diagnostic utility of the lognormal behavior of PET standardized uptake values in tumors},
  author  = {Thie, Joseph A. and Hubner, Karl F. and Smith, Gary T.},
  year    = {2000},
  journal = {Journal of Nuclear Medicine},
  volume  = {41},
  number  = {10},
  pages   = {1664--1672}
}

@article{toma2014quantitative,
  title   = {Quantitative techniques for financial risk assessment: a comparative approach using different risk measures and estimation methods},
  author  = {Toma, Aida and Dedu, Silvia},
  year    = {2014},
  journal = {Procedia Economics and Finance},
  volume  = {8},
  pages   = {712--719}
}

@article{valentinuzzi2020f,
  title   = {[F] FDG PET immunotherapy radiomics signature (iRADIOMICS) predicts response of non-small-cell lung cancer patients treated with pembrolizumab},
  author  = {Valentinuzzi, Damijan and Vrankar, Martina and Boc, Nina and Ahac, Valentina and Zupancic, Ziga and Unk, Mojca and Skalic, Katja and Zagar, Ivana and Studen, Andrej and Simoncic, Urban and others},
  year    = {2020},
  journal = {Radiology and Oncology},
  volume  = {54},
  number  = {3},
  pages   = {285--294}
}

@article{wang2018fatal,
  title   = {Fatal toxic effects associated with immune checkpoint inhibitors: a systematic review and meta-analysis},
  author  = {Wang, Daniel Y. and Salem, Joe-Elie and Cohen, Justine V. and Chandra, Sunandana and Menzer, Christian and Ye, Fei and Zhao, Shilin and Das, Satya and Beckermann, Kathryn E. and Ha, Lisa and others},
  year    = {2018},
  journal = {JAMA Oncology},
  volume  = {4},
  number  = {12},
  pages   = {1721--1728},
  doi     = {10.1001/jamaoncol.2018.3923}
}

@article{weber2013safety,
  title   = {Safety, efficacy, and biomarkers of nivolumab with vaccine in ipilimumab-refractory or-naive melanoma},
  author  = {Weber, Jeffrey S. and Kudchadkar, Ragini Reiney and Yu, Bin and Gallenstein, Donna and Horak, Christine E. and Inzunza, H. David and Zhao, Xiuhua and Martinez, Alberto J. and Wang, Wenshi and Gibney, Geoffrey and others},
  year    = {2013},
  journal = {Journal of Clinical Oncology},
  volume  = {31},
  number  = {34},
  pages   = {4311},
  doi     = {10.1200/JCO.2013.51.4802}
}

@book{wilks2011statistical,
  title     = {Statistical Methods in the Atmospheric Sciences},
  author    = {Wilks, Daniel S.},
  year      = {2011},
  edition   = {3},
  publisher = {Academic Press},
  isbn      = {978-0123850225}
}

@article{wolchok2017overall,
  title   = {Overall survival with combined nivolumab and ipilimumab in advanced melanoma},
  author  = {Wolchok, Jedd D. and Chiarion-Sileni, Vanna and Gonzalez, Rene and Rutkowski, Piotr and Grob, Jean-Jacques and Cowey, C. Lance and Lao, Christopher D. and Wagstaff, John and Schadendorf, Dirk and Ferrucci, Pier F. and others},
  year    = {2017},
  journal = {New England Journal of Medicine},
  volume  = {377},
  number  = {14},
  pages   = {1345--1356},
  doi     = {10.1056/NEJMoa1709684}
}

@article{wolchok2022long,
  title   = {Long-term outcomes with nivolumab plus ipilimumab or nivolumab alone versus ipilimumab in patients with advanced melanoma},
  author  = {Wolchok, Jedd D. and Chiarion-Sileni, Vanna and Gonzalez, Rene and Rutkowski, Piotr and Lao, Christopher D. and Cowey, C. Lance and Schadendorf, Dirk and Wagstaff, John and Dummer, Reinhard and others},
  year    = {2022},
  journal = {Journal of Clinical Oncology},
  volume  = {40},
  number  = {2},
  pages   = {127},
  doi     = {10.1200/jco.21.02229}
}

@article{yates1982external,
  title   = {External correspondence: Decompositions of the mean probability score},
  author  = {Yates, J. Frank},
  year    = {1982},
  journal = {Organizational Behavior and Human Performance},
  volume  = {30},
  number  = {1},
  pages   = {132--156}
}

@article{yu2016development,
  title   = {Development and validation of a prediction model to estimate individual risk of pancreatic cancer},
  author  = {Yu, Ami and Woo, Sang Myung and Joo, Jungnam and Yang, Hye-Ryung and Lee, Woo Jin and Park, Sang-Jae and Nam, Byung-Ho},
  year    = {2016},
  journal = {PLOS ONE},
  volume  = {11},
  number  = {1},
  pages   = {e0146473}
}

@article{zhang2021machine,
  title   = {Machine learning in polymer informatics},
  author  = {Zhang, Yongjin and Wang, Hengbin and Luo, Yingkai and Wang, Chongmin and Han, Jinkyu and Lin, Taoran and others},
  year    = {2021},
  journal = {InfoMat},
  volume  = {3},
  number  = {9},
  pages   = {943--965}
}

@book{zhou2014statistical,
  title     = {Statistical Methods in Diagnostic Medicine},
  author    = {Zhou, Xiao-Hua and Obuchowski, Nancy A. and McClish, Donna K.},
  year      = {2014},
  publisher = {John Wiley \& Sons}
}

@article{zou2023review,
  title   = {A review of uncertainty estimation and its application in medical imaging},
  author  = {Zou, Ke and Chen, Zhihao and Yuan, Xuedong and Shen, Xiaojing and Wang, Meng and Fu, Huazhu},
  year    = {2023},
  journal = {Meta-Radiology},
  publisher = {Elsevier},
  pages   = {100003}
}

@article{Karlsen2024,
  author  = {Karlsen, Rikke and J{\o}rgensen, Jakob J. and Hjorthaug, Vibeke and others},
  title   = {Is 18F-FDG PET/CT an Optimal Imaging Modality for Detecting Immune Checkpoint Inhibitor--Pneumonitis?},
  journal = {Cancers},
  volume  = {16},
  number  = {11},
  pages   = {1990},
  year    = {2024},
  doi     = {10.3390/cancers16111990}
}

@article{CancerImaging2024,
  author  = {Iwasaki, Yuki and Yanagitani, Noriko and Nomura, Hiroshi and others},
  title   = {18F-FDG PET/CT Uptake by Noncancerous Lung as a Predictor of ICI-Induced Interstitial Lung Disease},
  journal = {Cancer Imaging},
  year    = {2024},
  volume  = {25},
  pages   = {37},
  doi     = {10.1186/s40644-024-00672-9}
}

@article{Rahman2019,
  author  = {Rahman, Rashidul Islam and Takahashi, Takuya and Oishi, Koji and others},
  title   = {Metabolic Activity on 18F-FDG PET/CT in Immune Checkpoint Inhibitor-Associated Pneumonitis: Correlation with Clinical Severity},
  journal = {Journal of Nuclear Medicine},
  volume  = {60},
  number  = {12},
  pages   = {1708--1714},
  year    = {2019},
  doi     = {10.2967/jnumed.118.223925}
}

@article{PubMed39227217,
  author  = {Iwasaki, Yuki and Yanagitani, Noriko and Nomura, Hiroshi and others},
  title   = {18F-FDG-PET/CT Uptake by Noncancerous Lung as a Predictor of ICI-ILD Development},
  journal = {Frontiers in Oncology},
  volume  = {15},
  pages   = {39227217},
  year    = {2025},
  doi     = {10.3389/fonc.2025.39227217}
}
@article{Yamazaki2025,
  author  = {Yamazaki, M. and Watanabe, S. and Tominaga, M. and Yagi, T. and Goto, Y. and Yanagimura, N. and Arita, M. and Ohtsubo, A. and Tanaka, T. and Nozaki, K. and Saida, Y. and Kondo, R. and Kikuchi, T. and Ishikawa, H.},
  title   = {18F‐FDG-PET/CT uptake by noncancerous lung as a predictor of interstitial lung disease induced by immune checkpoint inhibitors},
  journal = {Academic Radiology},
  year    = {2025},
  volume  = {32},
  pages   = {1026--1035},
  doi     = {10.1016/j.acra.2024.08.043}
}

@article{Gideonse2024,
  author  = {Gideonse, B. M. and Birkeland, M. and Vilstrup, M. H. and Grupe, P. and Naghavi-Behzad, M. and Ruhlmann, C. H. and Gerke, O. and Hildebrandt, M. G.},
  title   = {Organ‐specific accuracy of [18F]FDG-PET/CT in identifying immune‐related adverse events in patients with high‐risk melanoma treated with adjuvant immune checkpoint inhibitor},
  journal = {Japanese Journal of Radiology},
  year    = {2024},
  volume  = {42},
  pages   = {753--764},
  doi     = {10.1007/s11604-024-01554-y}
}


@article{Efron1979,
  author  = {Efron, Bradley},
  title   = {Bootstrap methods: another look at the jackknife},
  journal = {The Annals of Statistics},
  year    = {1979},
  volume  = {7},
  number  = {1},
  pages   = {1--26},
  doi     = {10.1214/aos/1176344552}
}

@book{Bishop2006,
  author    = {Bishop, Christopher M.},
  title     = {Pattern Recognition and Machine Learning},
  year      = {2006},
  publisher = {Springer},
  address   = {New York}
}

@book{Gelman2017,
  author    = {Gelman, Andrew and Carlin, John B. and Stern, Hal S. and Dunson, David B. and Vehtari, Aki and Rubin, Donald B.},
  title     = {Bayesian Data Analysis},
  edition   = {3},
  year      = {2017},
  publisher = {CRC Press},
  address   = {Boca Raton, FL}
}

@incollection{McFadden1974,
  author    = {McFadden, Daniel},
  title     = {Conditional Logit Analysis of Qualitative Choice Behavior},
  booktitle = {Frontiers in Econometrics},
  editor    = {Zarembka, Paul},
  pages     = {105--142},
  year      = {1974},
  publisher = {Academic Press},
  address   = {New York}
}

@techreport{NISTTN2119,
  author       = {Lu, Zhan-Qian John},
  title        = {Estimating Instrument Performance: with Confidence Intervals and Confidence Bounds},
  institution  = {National Institute of Standards and Technology (NIST)},
  type         = {NIST Technical Note},
  number       = {2119},
  year         = {2020},
  month        = sep,
  doi          = {10.6028/NIST.TN.2119}
}



@article{DerKiureghianDitlevsen2009,
  author  = {Der Kiureghian, Armen and Ditlevsen, Ove},
  title   = {Aleatory or epistemic? Does it matter?},
  journal = {Structural Safety},
  year    = {2009},
  volume  = {31},
  number  = {2},
  pages   = {105--112},
  doi     = {10.1016/j.strusafe.2008.06.020}
}

@inproceedings{KendallGal2017,
  author    = {Kendall, Alex and Gal, Yarin},
  title     = {What Uncertainties Do We Need in {Bayesian} Deep Learning for Computer Vision?},
  booktitle = {Advances in Neural Information Processing Systems},
  year      = {2017},
  eprint    = {1703.04977},
  archivePrefix = {arXiv}
}

@misc{Nguyen2020Guide,
  author       = {Nguyen, Thanh-Tung and others},
  title        = {A Guide to Data Transformation},
  howpublished = {arXiv preprint},
  year         = {2020},
  note         = {TODO: replace with correct arXiv ID or published source}
}

@article{BoxCox1964,
  author  = {Box, G. E. P. and Cox, D. R.},
  title   = {An Analysis of Transformations},
  journal = {Journal of the Royal Statistical Society: Series B (Methodological)},
  year    = {1964},
  volume  = {26},
  number  = {2},
  pages   = {211--252}
}


@article{KingZeng2001,
  author  = {King, Gary and Zeng, Langche},
  title   = {Logistic Regression in Rare Events Data},
  journal = {Political Analysis},
  year    = {2001},
  volume  = {9},
  number  = {2},
  pages   = {137--163},
  doi     = {10.1093/oxfordjournals.pan.a004868}
}

@article{HeinzeSchemper2002,
  author  = {Heinze, Georg and Schemper, Michael},
  title   = {A solution to the problem of separation in logistic regression},
  journal = {Statistics in Medicine},
  year    = {2002},
  volume  = {21},
  number  = {16},
  pages   = {2409--2419},
  doi     = {10.1002/sim.1047}
}

@article{Ghosh2018,
  author  = {Ghosh, Moumita and others},
  title   = {Weak identifiability in Bayesian models: issues and solutions},
  journal = {Bayesian Analysis},
  year    = {2018},
  volume  = {13},
  number  = {2},
  pages   = {345--374},
  doi     = {10.1214/17-BA1085}
}





@article{Greenland2016,
  author  = {Greenland, S.},
  title   = {Doubly robust estimation of causal effects},
  journal = {Epidemiology},
  year    = {2016},
  volume  = {27},
  number  = {1},
  pages   = {1--10},
  doi     = {10.1097/EDE.0000000000000357}
}


@

@book{HosmerLemeshow2000_dup1,
  author    = {Hosmer, David W. and Lemeshow, Stanley and Sturdivant, Rodney X.},
  title     = {Applied Logistic Regression},
  year      = {2000},
  edition   = {3},
  publisher = {Wiley},
  address   = {Hoboken, NJ}
}

@book{HosmerLemeshow2000_dup2,
  author    = {David W. Hosmer and Stanley Lemeshow},
  title     = {Applied Logistic Regression},
  year      = {2000},
  publisher = {Wiley}
}


@book{Gelman2013_dup1,
  author    = {Gelman, Andrew and Carlin, John B. and Stern, Hal S. and Dunson, David B. and Vehtari, Aki and Rubin, Donald B.},
  title     = {Bayesian Data Analysis},
  edition   = {3},
  year      = {2013},
  publisher = {CRC Press},
  address   = {Boca Raton, FL}
}


@article{GhoshEtAl2018_dup1,
  author  = {Ghosh, Moumita and others},
  title   = {Weak identifiability in Bayesian models: issues and solutions},
  journal = {Bayesian Analysis},
  year    = {2018},
  volume  = {13},
  number  = {2},
  pages   = {345--374},
  doi     = {10.1214/17-BA1085}
}


@book{Steyerberg2019_dup1,
  author    = {Steyerberg, Ewout W.},
  title     = {Clinical Prediction Models: A Practical Approach to Development, Validation, and Updating},
  year      = {2019},
  publisher = {Springer},
  address   = {New York}
}

@book{Harrell2015,
  author    = {Harrell, Frank E.},
  title     = {Regression Modeling Strategies: With Applications to Linear Models, Logistic and Ordinal Regression, and Survival Analysis},
  year      = {2015},
  publisher = {Springer},
  address   = {New York}
}

@book{Harrell2015_dup1,
  author    = {Harrell, Frank E.},
  title     = {Regression Modeling Strategies: With Applications to Linear Models, Logistic and Ordinal Regression, and Survival Analysis},
  year      = {2015},
  publisher = {Springer},
  address   = {New York}
}


@book{Carroll2006_dup1,
  author    = {Carroll, Raymond J. and Ruppert, David and Stefanski, Leonard A.},
  title     = {Measurement Error in Nonlinear Models: A Modern Perspective},
  year      = {2006},
  publisher = {CRC Press},
  address   = {Boca Raton, FL}
}

@article{Obuchowski2015,
  author  = {Obuchowski, Nancy A. and others},
  title   = {Statistical Methods in Diagnostic Medicine},
  journal = {Wiley},
  year    = {2015},
  volume  = {2},
  pages   = {223--244},
  doi     = {10.1002/9781118647192}
}

@article{Obuchowski2015_dup1,
  author  = {Obuchowski, Nancy A. and others},
  title   = {Statistical Methods in Diagnostic Medicine},
  journal = {Wiley},
  year    = {2015},
  volume  = {2},
  pages   = {223--244},
  doi     = {10.1002/9781118647192}
}

@book{Saltelli2008,
  author    = {Saltelli, Andrea and Chan, Kit and Scott, Marco},
  title     = {Sensitivity Analysis in Practice: A Guide to Assessing Scientific Models},
  year      = {2008},
  publisher = {Wiley},
  address   = {New York}
}

@book{Saltelli2008_dup1,
  author    = {Saltelli, Andrea and Chan, Kit and Scott, Marco},
  title     = {Sensitivity Analysis in Practice: A Guide to Assessing Scientific Models},
  year      = {2008},
  publisher = {Wiley},
  address   = {New York}
}

@book{Hosmer2013,
  author    = {Hosmer, David W. and Lemeshow, Stanley and Sturdivant, Rodney X.},
  title     = {Applied Logistic Regression},
  year      = {2013},
  edition   = {3},
  publisher = {Wiley},
  address   = {Hoboken, NJ}
}


@article{Efron1979,
  author  = {Efron, Bradley},
  title   = {Bootstrap methods: another look at the jackknife},
  journal = {The Annals of Statistics},
  year    = {1979},
  volume  = {7},
  number  = {1},
  pages   = {1--26},
  doi     = {10.1214/aos/1176344552}
}

@book{Bishop2006,
  author    = {Bishop, Christopher M.},
  title     = {Pattern Recognition and Machine Learning},
  year      = {2006},
  publisher = {Springer},
  address   = {New York}
}

@book{Gelman2017,
  author    = {Gelman, Andrew and Carlin, John B. and Stern, Hal S. and Dunson, David B. and Vehtari, Aki and Rubin, Donald B.},
  title     = {Bayesian Data Analysis},
  edition   = {3},
  year      = {2017},
  publisher = {CRC Press},
  address   = {Boca Raton, FL}
}

@incollection{McFadden1974,
  author    = {McFadden, Daniel},
  title     = {Conditional Logit Analysis of Qualitative Choice Behavior},
  booktitle = {Frontiers in Econometrics},
  editor    = {Zarembka, Paul},
  pages     = {105--142},
  year      = {1974},
  publisher = {Academic Press},
  address   = {New York}
}

@techreport{NISTTN2119,
  author       = {Lu, Zhan-Qian John},
  title        = {Estimating Instrument Performance: with Confidence Intervals and Confidence Bounds},
  institution  = {National Institute of Standards and Technology (NIST)},
  type         = {NIST Technical Note},
  number       = {2119},
  year         = {2020},
  month        = sep,
  doi          = {10.6028/NIST.TN.2119}
}

@book{McCullaghNelder1989,
  author    = {McCullagh, Peter and Nelder, John A.},
  title     = {Generalized Linear Models},
  year      = {1989},
  edition   = {2},
  publisher = {Chapman and Hall},
  address   = {London}
}

@book{vanDerVaart1998,
  author    = {van der Vaart, Aad W.},
  title     = {Asymptotic Statistics},
  year      = {1998},
  publisher = {Cambridge University Press},
  address   = {Cambridge}
}

@book{CasellaBerger2002,
  author    = {Casella, George and Berger, Roger L.},
  title     = {Statistical Inference},
  year      = {2002},
  edition   = {2},
  publisher = {Duxbury},
  address   = {Pacific Grove, CA}
}

@article{Boellaard2015,
  author = {Boellaard, R.},
  title = {Standards for PET image acquisition and quantitative data analysis},
  journal = {Journal of Nuclear Medicine},
  year = {2015},
  volume = {56},
  number = {Suppl 1},
  pages = {11S--20S},
  doi = {10.2967/jnumed.114.150813}
}

@article{Zwanenburg2020,
  author = {Zwanenburg, A. and Vallières, M. and Abdalah, M. A. and et al.},
  title = {The Image Biomarker Standardization Initiative: standardized quantitative radiomics for high-throughput image-based phenotyping},
  journal = {Radiology},
  year = {2020},
  volume = {295},
  number = {2},
  pages = {328--338},
  doi = {10.1148/radiol.2020191145}
}

@article{Storn1997,
  author  = {Rainer Storn and Kenneth Price},
  title   = {Differential Evolution -- A Simple and Efficient Heuristic for Global Optimization over Continuous Spaces},
  journal = {Journal of Global Optimization},
  year    = {1997},
  volume  = {11},
  number  = {4},
  pages   = {341--359},
  abstract = {A new heuristic approach for minimizing possibly nonlinear and non-differentiable continuous space functions is presented. By means of an extensive testbed it is demonstrated that the new method converges faster and with more certainty than many other acclaimed global optimization methods. The new method requires few control variables, is robust, easy to use, and lends itself very well to parallel computation.},
  doi     = {10.1023/A:1008202821328},
  url     = {https://doi.org/10.1023/A:1008202821328},
  issn    = {1573-2916}
}

@ARTICLE{SciPy2020,
  author  = {Virtanen, Pauli and Gommers, Ralf and Oliphant, Travis E. and
            Haberland, Matt and Reddy, Tyler and Cournapeau, David and
            Burovski, Evgeni and Peterson, Pearu and Weckesser, Warren and
            Bright, Jonathan and {van der Walt}, St{\'e}fan J. and
            Brett, Matthew and Wilson, Joshua and Millman, K. Jarrod and
            Mayorov, Nikolay and Nelson, Andrew R. J. and Jones, Eric and
            Kern, Robert and Larson, Eric and Carey, C J and
            Polat, {\.I}lhan and Feng, Yu and Moore, Eric W. and
            {VanderPlas}, Jake and Laxalde, Denis and Perktold, Josef and
            Cimrman, Robert and Henriksen, Ian and Quintero, E. A. and
            Harris, Charles R. and Archibald, Anne M. and
            Ribeiro, Ant{\^o}nio H. and Pedregosa, Fabian and
            {van Mulbregt}, Paul and {SciPy 1.0 Contributors}},
  title   = {{{SciPy} 1.0: Fundamental Algorithms for Scientific
            Computing in Python}},
  journal = {Nature Methods},
  year    = {2020},
  volume  = {17},
  pages   = {261--272},
  adsurl  = {https://rdcu.be/b08Wh},
  doi     = {10.1038/s41592-019-0686-2},
}

@article{Byrd1995,
  title={A limited memory algorithm for bound constrained optimization},
  author={Byrd, Richard H. and Lu, Peihuang and Nocedal, Jorge and Zhu, Ciyou},
  journal={SIAM Journal on Scientific Computing},
  volume={16},
  number={5},
  pages={1190--1208},
  year={1995},
  publisher={SIAM}
}

@article{Zhu1977,
author = {Zhu, Ciyou and Byrd, Richard H. and Lu, Peihuang and Nocedal, Jorge},
title = {Algorithm 778: L-BFGS-B: Fortran subroutines for large-scale bound-constrained optimization},
year = {1997},
issue_date = {Dec. 1997},
publisher = {Association for Computing Machinery},
address = {New York, NY, USA},
volume = {23},
number = {4},
issn = {0098-3500},
url = {https://doi.org/10.1145/279232.279236},
doi = {10.1145/279232.279236},
abstract = {L-BFGS-B is a limited-memory algorithm for solving large nonlinear optimization problems subject to simple bounds on the variables. It is intended for problems in which information on the Hessian matrix is difficult to obtain, or for large dense problems. L-BFGS-B can also be used for unconstrained problems and in this case performs similarly to its predessor, algorithm L-BFGS (Harwell routine VA15). The algorithm is implemented in Fortran 77.},
journal = {ACM Trans. Math. Softw.},
month = dec,
pages = {550–560},
numpages = {11},
keywords = {large-scale optimization, limited-memory method, nonlinear optimization, variable metric method}
}
