1 year ago · c9bf17fa1e
--- a/python-paper/figs/bayes/Bayes_bs_Gauss_bowel.pdf
+++ b/python-paper/figs/bayes/Bayes_bs_Gauss_bowel.pdf
--- a/python-paper/figs/bayes/Bayes_bs_Gauss_lung.pdf
+++ b/python-paper/figs/bayes/Bayes_bs_Gauss_lung.pdf
--- a/python-paper/figs/bayes/Bayes_bs_Gauss_thyroid.pdf
+++ b/python-paper/figs/bayes/Bayes_bs_Gauss_thyroid.pdf
--- a/python-paper/figs/bayes/Bayes_bs_bowel.pdf
+++ b/python-paper/figs/bayes/Bayes_bs_bowel.pdf
--- a/python-paper/figs/bayes/Bayes_bs_log_normal_bowel.pdf
+++ b/python-paper/figs/bayes/Bayes_bs_log_normal_bowel.pdf
--- a/python-paper/figs/bayes/Bayes_bs_log_normal_lung.pdf
+++ b/python-paper/figs/bayes/Bayes_bs_log_normal_lung.pdf
--- a/python-paper/figs/bayes/Bayes_bs_log_normal_thyroid.pdf
+++ b/python-paper/figs/bayes/Bayes_bs_log_normal_thyroid.pdf
--- a/python-paper/figs/bayes/Bayes_bs_lung.pdf
+++ b/python-paper/figs/bayes/Bayes_bs_lung.pdf
--- a/python-paper/figs/bayes/Bayes_bs_thyroid.pdf
+++ b/python-paper/figs/bayes/Bayes_bs_thyroid.pdf
--- a/python-paper/figs/bayes/Bayes_mvn_Gauss_bowel.pdf
+++ b/python-paper/figs/bayes/Bayes_mvn_Gauss_bowel.pdf
--- a/python-paper/figs/bayes/Bayes_mvn_Gauss_lung.pdf
+++ b/python-paper/figs/bayes/Bayes_mvn_Gauss_lung.pdf
--- a/python-paper/figs/bayes/Bayes_mvn_Gauss_thyroid.pdf
+++ b/python-paper/figs/bayes/Bayes_mvn_Gauss_thyroid.pdf
--- a/python-paper/figs/bayes/Bayes_mvn_bowel.pdf
+++ b/python-paper/figs/bayes/Bayes_mvn_bowel.pdf
--- a/python-paper/figs/bayes/Bayes_mvn_log_normal_bowel.pdf
+++ b/python-paper/figs/bayes/Bayes_mvn_log_normal_bowel.pdf
--- a/python-paper/figs/bayes/Bayes_mvn_log_normal_lung.pdf
+++ b/python-paper/figs/bayes/Bayes_mvn_log_normal_lung.pdf
--- a/python-paper/figs/bayes/Bayes_mvn_log_normal_thyroid.pdf
+++ b/python-paper/figs/bayes/Bayes_mvn_log_normal_thyroid.pdf
--- a/python-paper/figs/bayes/Bayes_mvn_lung.pdf
+++ b/python-paper/figs/bayes/Bayes_mvn_lung.pdf
--- a/python-paper/figs/bayes/Bayes_mvn_thyroid.pdf
+++ b/python-paper/figs/bayes/Bayes_mvn_thyroid.pdf
--- a/python-paper/figs/bayes/Bayes_mvn_trunc_Gauss_bowel.pdf
+++ b/python-paper/figs/bayes/Bayes_mvn_trunc_Gauss_bowel.pdf
--- a/python-paper/figs/bayes/Bayes_mvn_trunc_Gauss_lung.pdf
+++ b/python-paper/figs/bayes/Bayes_mvn_trunc_Gauss_lung.pdf
--- a/python-paper/figs/bayes/Bayes_mvn_trunc_Gauss_thyroid.pdf
+++ b/python-paper/figs/bayes/Bayes_mvn_trunc_Gauss_thyroid.pdf
--- a/python-paper/figs/bayes_f/Bayes_bs_Gauss_bowel.pdf
+++ b/python-paper/figs/bayes_f/Bayes_bs_Gauss_bowel.pdf
--- a/python-paper/figs/bayes_f/Bayes_bs_Gauss_lung.pdf
+++ b/python-paper/figs/bayes_f/Bayes_bs_Gauss_lung.pdf
--- a/python-paper/figs/bayes_f/Bayes_bs_Gauss_thyroid.pdf
+++ b/python-paper/figs/bayes_f/Bayes_bs_Gauss_thyroid.pdf
--- a/python-paper/figs/bayes_f/Bayes_bs_log_normal_bowel.pdf
+++ b/python-paper/figs/bayes_f/Bayes_bs_log_normal_bowel.pdf
--- a/python-paper/figs/bayes_f/Bayes_bs_log_normal_lung.pdf
+++ b/python-paper/figs/bayes_f/Bayes_bs_log_normal_lung.pdf
--- a/python-paper/figs/bayes_f/Bayes_bs_log_normal_thyroid.pdf
+++ b/python-paper/figs/bayes_f/Bayes_bs_log_normal_thyroid.pdf
--- a/python-paper/figs/bayes_f/Bayes_mvn_Gauss_bowel.pdf
+++ b/python-paper/figs/bayes_f/Bayes_mvn_Gauss_bowel.pdf
--- a/python-paper/figs/bayes_f/Bayes_mvn_Gauss_lung.pdf
+++ b/python-paper/figs/bayes_f/Bayes_mvn_Gauss_lung.pdf
--- a/python-paper/figs/bayes_f/Bayes_mvn_Gauss_thyroid.pdf
+++ b/python-paper/figs/bayes_f/Bayes_mvn_Gauss_thyroid.pdf
--- a/python-paper/figs/bayes_f/Bayes_mvn_log_normal_bowel.pdf
+++ b/python-paper/figs/bayes_f/Bayes_mvn_log_normal_bowel.pdf
--- a/python-paper/figs/bayes_f/Bayes_mvn_log_normal_lung.pdf
+++ b/python-paper/figs/bayes_f/Bayes_mvn_log_normal_lung.pdf
--- a/python-paper/figs/bayes_f/Bayes_mvn_log_normal_thyroid.pdf
+++ b/python-paper/figs/bayes_f/Bayes_mvn_log_normal_thyroid.pdf
--- a/python-paper/figs/bayes_f_sb/Bayes_bs_Gauss_bowel.pdf
+++ b/python-paper/figs/bayes_f_sb/Bayes_bs_Gauss_bowel.pdf
--- a/python-paper/figs/bayes_f_sb/Bayes_bs_Gauss_lung.pdf
+++ b/python-paper/figs/bayes_f_sb/Bayes_bs_Gauss_lung.pdf
--- a/python-paper/figs/bayes_f_sb/Bayes_bs_Gauss_thyroid.pdf
+++ b/python-paper/figs/bayes_f_sb/Bayes_bs_Gauss_thyroid.pdf
--- a/python-paper/figs/bayes_f_sb/Bayes_bs_log_normal_bowel.pdf
+++ b/python-paper/figs/bayes_f_sb/Bayes_bs_log_normal_bowel.pdf
--- a/python-paper/figs/bayes_f_sb/Bayes_bs_log_normal_lung.pdf
+++ b/python-paper/figs/bayes_f_sb/Bayes_bs_log_normal_lung.pdf
--- a/python-paper/figs/bayes_f_sb/Bayes_bs_log_normal_thyroid.pdf
+++ b/python-paper/figs/bayes_f_sb/Bayes_bs_log_normal_thyroid.pdf
--- a/python-paper/figs/bayes_f_sb/Bayes_mvn_Gauss_bowel.pdf
+++ b/python-paper/figs/bayes_f_sb/Bayes_mvn_Gauss_bowel.pdf
--- a/python-paper/figs/bayes_f_sb/Bayes_mvn_Gauss_lung.pdf
+++ b/python-paper/figs/bayes_f_sb/Bayes_mvn_Gauss_lung.pdf
--- a/python-paper/figs/bayes_f_sb/Bayes_mvn_Gauss_thyroid.pdf
+++ b/python-paper/figs/bayes_f_sb/Bayes_mvn_Gauss_thyroid.pdf
--- a/python-paper/figs/bayes_f_sb/Bayes_mvn_log_normal_bowel.pdf
+++ b/python-paper/figs/bayes_f_sb/Bayes_mvn_log_normal_bowel.pdf
--- a/python-paper/figs/bayes_f_sb/Bayes_mvn_log_normal_lung.pdf
+++ b/python-paper/figs/bayes_f_sb/Bayes_mvn_log_normal_lung.pdf
--- a/python-paper/figs/bayes_f_sb/Bayes_mvn_log_normal_thyroid.pdf
+++ b/python-paper/figs/bayes_f_sb/Bayes_mvn_log_normal_thyroid.pdf
--- a/python-paper/figs/logit/logit_boots.pdf
+++ b/python-paper/figs/logit/logit_boots.pdf
--- a/python-paper/figs/logit/logit_boots_sel.pdf
+++ b/python-paper/figs/logit/logit_boots_sel.pdf
--- a/python-paper/figs/logit/logit_boots_zoom.pdf
+++ b/python-paper/figs/logit/logit_boots_zoom.pdf
--- a/python-paper/figs/logit/logit_bs_bowel.pdf
+++ b/python-paper/figs/logit/logit_bs_bowel.pdf
--- a/python-paper/figs/logit/logit_bs_lung.pdf
+++ b/python-paper/figs/logit/logit_bs_lung.pdf
--- a/python-paper/figs/logit/logit_bs_thyroid.pdf
+++ b/python-paper/figs/logit/logit_bs_thyroid.pdf
--- a/python-paper/figs/logit/logit_mvn_bowel.pdf
+++ b/python-paper/figs/logit/logit_mvn_bowel.pdf
--- a/python-paper/figs/logit/logit_mvn_lung.pdf
+++ b/python-paper/figs/logit/logit_mvn_lung.pdf
--- a/python-paper/figs/logit/logit_mvn_thyroid.pdf
+++ b/python-paper/figs/logit/logit_mvn_thyroid.pdf
--- a/python-paper/figs/logit_sb/logit_boots.pdf
+++ b/python-paper/figs/logit_sb/logit_boots.pdf
--- a/python-paper/figs/logit_sb/logit_boots_sel.pdf
+++ b/python-paper/figs/logit_sb/logit_boots_sel.pdf
--- a/python-paper/figs/logit_sb/logit_boots_zoom.pdf
+++ b/python-paper/figs/logit_sb/logit_boots_zoom.pdf
--- a/python-paper/figs/logit_sb/logit_bs_bowel.pdf
+++ b/python-paper/figs/logit_sb/logit_bs_bowel.pdf
--- a/python-paper/figs/logit_sb/logit_bs_lung.pdf
+++ b/python-paper/figs/logit_sb/logit_bs_lung.pdf
--- a/python-paper/figs/logit_sb/logit_bs_thyroid.pdf
+++ b/python-paper/figs/logit_sb/logit_bs_thyroid.pdf
--- a/python-paper/figs/logit_sb/logit_mvn_bowel.pdf
+++ b/python-paper/figs/logit_sb/logit_mvn_bowel.pdf
--- a/python-paper/figs/logit_sb/logit_mvn_lung.pdf
+++ b/python-paper/figs/logit_sb/logit_mvn_lung.pdf
--- a/python-paper/figs/logit_sb/logit_mvn_thyroid.pdf
+++ b/python-paper/figs/logit_sb/logit_mvn_thyroid.pdf
--- a/python-paper/logit_regression.ipynb
+++ b/python-paper/logit_regression.ipynb
--- a/python/paper-bayesian_modelling_box-cox.ipynb
+++ b/python/paper-bayesian_modelling_box-cox.ipynb
--- a/python/bayesian/bayesian_bygroup.ipynb
+++ b/python/bayesian/bayesian_bygroup.ipynb
--- a/python/bayesian/bayesian_experimental.ipynb
+++ b/python/bayesian/bayesian_experimental.ipynb
--- a/python/bayesian/bayesian_full.ipynb
+++ b/python/bayesian/bayesian_full.ipynb
--- a/python/bayesian/bayesian_full_stratified-boots.ipynb
+++ b/python/bayesian/bayesian_full_stratified-boots.ipynb
--- a/python/paper-bayesian_modelling_truncated-gauss.ipynb
+++ b/python/paper-bayesian_modelling_truncated-gauss.ipynb
--- a/python/figs/Bayes_bs_Gauss_bowel.pdf
+++ b/python/figs/Bayes_bs_Gauss_bowel.pdf
--- a/python/figs/Bayes_bs_Gauss_lung.pdf
+++ b/python/figs/Bayes_bs_Gauss_lung.pdf
--- a/python/figs/Bayes_bs_Gauss_thyroid.pdf
+++ b/python/figs/Bayes_bs_Gauss_thyroid.pdf
--- a/python/figs/Bayes_bs_log_normal_bowel.pdf
+++ b/python/figs/Bayes_bs_log_normal_bowel.pdf
--- a/python/figs/Bayes_bs_log_normal_lung.pdf
+++ b/python/figs/Bayes_bs_log_normal_lung.pdf
--- a/python/figs/Bayes_bs_log_normal_thyroid.pdf
+++ b/python/figs/Bayes_bs_log_normal_thyroid.pdf
--- a/python/figs/Bayes_bs_trunc_Gauss_bowel.pdf
+++ b/python/figs/Bayes_bs_trunc_Gauss_bowel.pdf
--- a/python/figs/Bayes_bs_trunc_Gauss_lung.pdf
+++ b/python/figs/Bayes_bs_trunc_Gauss_lung.pdf
--- a/python/figs/Bayes_bs_trunc_Gauss_thyroid.pdf
+++ b/python/figs/Bayes_bs_trunc_Gauss_thyroid.pdf
--- a/python/figs/Bayes_mvn_Gauss_bowel.pdf
+++ b/python/figs/Bayes_mvn_Gauss_bowel.pdf
--- a/python/figs/Bayes_mvn_Gauss_lung.pdf
+++ b/python/figs/Bayes_mvn_Gauss_lung.pdf
--- a/python/figs/Bayes_mvn_Gauss_thyroid.pdf
+++ b/python/figs/Bayes_mvn_Gauss_thyroid.pdf
--- a/python/figs/Bayes_mvn_log_normal_bowel.pdf
+++ b/python/figs/Bayes_mvn_log_normal_bowel.pdf
--- a/python/figs/Bayes_mvn_log_normal_lung.pdf
+++ b/python/figs/Bayes_mvn_log_normal_lung.pdf
--- a/python/figs/Bayes_mvn_log_normal_thyroid.pdf
+++ b/python/figs/Bayes_mvn_log_normal_thyroid.pdf
--- a/python/figs/Bayes_mvn_trunc_Gauss_bowel.pdf
+++ b/python/figs/Bayes_mvn_trunc_Gauss_bowel.pdf
--- a/python/figs/Bayes_mvn_trunc_Gauss_lung.pdf
+++ b/python/figs/Bayes_mvn_trunc_Gauss_lung.pdf
--- a/python/figs/Bayes_mvn_trunc_Gauss_thyroid.pdf
+++ b/python/figs/Bayes_mvn_trunc_Gauss_thyroid.pdf
--- a/python/figs/boxcox_bs_bowel.pdf
+++ b/python/figs/boxcox_bs_bowel.pdf
--- a/python/figs/boxcox_bs_lung.pdf
+++ b/python/figs/boxcox_bs_lung.pdf
--- a/python/figs/boxcox_bs_thyroid.pdf
+++ b/python/figs/boxcox_bs_thyroid.pdf
--- a/python/figs/boxcox_mvn_bowel.pdf
+++ b/python/figs/boxcox_mvn_bowel.pdf
--- a/python/figs/boxcox_mvn_lung.pdf
+++ b/python/figs/boxcox_mvn_lung.pdf
--- a/python/figs/boxcox_mvn_thyroid.pdf
+++ b/python/figs/boxcox_mvn_thyroid.pdf
--- a/python/figs/logit_boots.pdf
+++ b/python/figs/logit_boots.pdf
--- a/python/figs/logit_boots_sel.pdf
+++ b/python/figs/logit_boots_sel.pdf
--- a/python/figs/logit_boots_zoom.pdf
+++ b/python/figs/logit_boots_zoom.pdf
--- a/python/figs/logit_bowel.pdf
+++ b/python/figs/logit_bowel.pdf
--- a/python/figs/logit_lung.pdf
+++ b/python/figs/logit_lung.pdf
--- a/python/figs/logit_mvn.pdf
+++ b/python/figs/logit_mvn.pdf