|  | @@ -118,9 +118,9 @@ end
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				|  |  |  %% -----===== Save geometry files =====-----
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				|  |  |  waitbar(2/total_num_steps, hWaitbar, 'Step 3: Save geometry files');
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				|  |  |  
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				|  |  | -% patient_dir = uifile('getdir', 'Save the patient data to directory');
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				|  |  | +patient_dir = uifile('getdir', 'Save the patient data to directory');
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				|  |  |  % !!! Grozomah
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				|  |  | -patient_dir = 'C:\010-work\003_localGit\WiscPlan_v2\data\PatientData';
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				|  |  | +% patient_dir = 'C:\010-work\003_localGit\WiscPlan_v2\data\PatientData';
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				|  |  |  
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				|  |  |  % make directories
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				|  |  |  mkdir(patient_dir);
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				|  | @@ -130,6 +130,8 @@ mkdir(fullfile(patient_dir, 'matlab_files'));
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				|  |  |  mkdir(fullfile(patient_dir, 'opt_input'));
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				|  |  |  mkdir(fullfile(patient_dir, 'opt_output'));
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				|  |  |  
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				|  |  | +Geometry.patient_dir = patient_dir;
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				|  |  | +
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				|  |  |  waitbar(2.33/total_num_steps, hWaitbar, 'Step 3: Save matlab geometry files');
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				|  |  |  % Save matlab geometry file
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				|  |  |  save(fullfile(patient_dir, 'matlab_files', 'Geometry.mat'), 'Geometry');
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