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- var crfVisit={};
- crfVisit.config=new Object();
- crfVisit.setDebug=
- function(debug=null){
- if (debug){
- this.print=function(msg){debug.this.print(msg);};
- this.clear=function(){debug.clear();}
- return;
- }
- //provide default functions if not debug object is available
- this.print=function(msg){console.log(msg);}
- this.clear=function(){;}
- }
- crfVisit.setDebug();
- //harmonize signature
- //(schema,query,row,action=cvDoNothing,container=null
- crfVisit.insertRows=
- function(schema,query,rows,action=null,container=null,failure=null){
- this.modifyRows('insert',schema,query,rows,action,container);
- }
- crfVisit.deleteRows=
- function(schema,query,rows,action=null,container=null,failure=null){
- this.modifyRows('delete',schema,query,rows,action,container);
- }
- crfVisit.modifyRows=
- function(mode,schema,query,rows,action=null,container=null,failure=null){
- //insert rows to container/schema/query and return with action
- let fName="[cvModifyRows/"+mode+"]";
- this.print(fName+' '+schema+'/'+query);
- let qconfig=new Object();
- qconfig.schemaName=schema;
- qconfig.queryName=query;
- if (container) qconfig.containerPath=container;
- if (!rows) {
- this.print(fName+' rows '+rows);
- return;
- }
- qconfig.rows=rows;
- qconfig.success=function(data){;};
- if (action) qconfig.success=action;
- if (mode=='insert') LABKEY.Query.insertRows(qconfig);
- if (mode=='update') LABKEY.Query.updateRows(qconfig);
- if (mode=='delete') LABKEY.Query.deleteRows(qconfig);
- this.print(fName+" done");
- }
- crfVisit.selectRows=
- function(schema,query,filters=[],action=null, container=null, failure=null, columns=null){
- let fName="[cvSelectRows]";
- this.print(fName+' '+schema+' '+query+' '+container);
- let qconfig=new Object();
- qconfig.schemaName=schema;
- qconfig.queryName=query;
- if (container) qconfig.containerPath=container;
- qconfig.filterArray=filters;
- qconfig.success=function(data){;};
- if (action) qconfig.success=action;
- if (failure) qconfig.failure=failure;
- if (columns) qconfig.columns=columns;
- LABKEY.Query.selectRows(qconfig);
- this.print(fName+" done");
- }
- crfVisit.createCrfStatus=
- function(crfEntry){
- let crfStatus=new Object();
- crfStatus.entryId=crfEntry.entryId;
- crfStatus.submissionDate=new Date();
- crfStatus.FormStatus=crfEntry.FormStatus;
- crfStatus.User=crfEntry.UserId;
- crfStatus.Form=crfEntry.Form;
- return crfStatus;
- }
- crfVisit.init=
- function(cb=null){
- let that=this;
- let action=function(){that.scriptsLoaded(cb);};
- LABKEY.Utils.requiresScript(["crfTecant/runQuery.js","crfTecant/crfReviewSection.js","crfTecant/participantIdManager.js","crfTecant/variableList.js","crfTecant/webdav.js","crfTecant/crfPrint.js"],action);
- }
- crfVisit.scriptsLoaded=
- function(cb=null){
- participantIdManager.set(this);
- webdav.set(this);
- crfReviewSection.set(this);
- crfPrint.set(this);
- if (cb) cb();
- }
- crfVisit.getElement=
- function(id){
- return this.config.document.getElementById(id);
- }
- crfVisit.setContainer=
- function(label,container){
- let config=this.config;
- if (!(config.formConfig.hasOwnProperty('container'))){
- config.formConfig.container=new Array();
- }
- config.formConfig.container[label]=container;
- }
- crfVisit.getContainer=
- function(label){
- return this.config.formConfig.container[label];
- }
- crfVisit.getCRFrefFirst=
- function(){
- //crfRef is part of html call and gets stored in the page
- return this.getElement(this.config.crfRefId).innerHTML;
- }
- crfVisit.getCRFref=
- function (){
- //'crfRefId'
- return this.config.formConfig.crfEntry['entryId'];
- }
- crfVisit.getCRFrefData=
- function(){
- let parentCrf=this.config.formConfig.crfEntry['parentCrf'];
- if (parentCrf!=undefined) return parentCrf;
- return this.getCRFref();
- }
- crfVisit.onFailure=
- function(errorInfo, options, responseObj){
-
- if (errorInfo && errorInfo.exception)
- alert("Failure: " + errorInfo.exception);
- else
- alert("Failure: " + responseObj.statusText);
- }
- crfVisit.doNothing=
- function (){
- this.print('doNothing called');
- }
- crfVisit.getSnapshotObject=
- function(){
- if (!("dataQueriesSnapshot" in this.config.formConfig))
- this.config.formConfig.dataQueriesSnapshot=new Object();
- return this.config.formConfig.dataQueriesSnapshot;
- }
- crfVisit.getQuerySnapshot=
- function(queryName){
- //check whether queryName is in snapshotObject?
- return this.getSnapshotObject()[queryName];
- }
- crfVisit.getLayoutObject=
- function(){
- if (!("dataQueriesLayout" in this.config.formConfig))
- this.config.formConfig.dataQueriesLayout=new Object();
- return this.config.formConfig.dataQueriesLayout;
- }
- crfVisit.getQueryLayout=
- function(queryName){
- //check whether queryName is in snapshotObject?
- return this.getLayoutObject()[queryName];
- }
- crfVisit.getLookupObject=
- function(){
- if (!("lookup" in this.config.formConfig))
- this.config.formConfig.lookup=new Object();
- return this.config.formConfig.lookup;
- }
- crfVisit.getLookup=
- function(queryName){
- let x=this.getLookupObject();
- if (queryName in x) return x[queryName];
- return null;
- }
- crfVisit.getQueryList=
- function(){
- if (!("queryList" in this.config.formConfig))
- this.config.formConfig.queryList=new Object();
- return this.config.formConfig.queryList;
- }
- crfVisit.getIdManager=
- function(){
- if (!("idManager" in this.config.formConfig))
- this.config.formConfig.idManager=participantIdManager.getObject();
- return this.config.formConfig.idManager;
- }
- crfVisit.getAdditionalData=
- function(formSetupEntry){
- //return information on additional data associated with the form
- //additionalData is a sub-list with multiple entries per patient/visit
-
- let config=this.config;
- //argument is the row of the formSetup setup list
- let queryName=config.formConfig.queryMap[formSetupEntry['queryName']];
- let fName='[getAdditionalData/'+queryName+']';
- this.print(fName);
- //additionalData holds a reference to all queries already parsed
- //this helps in reducing number of calls to the database (I assume)
- if (queryName in config.formConfig.additionalData){
- this.print(fName+': Returning preset value');
- return config.formConfig.additionalData[queryName];
- }
- //first time we see this query, so we have to do the setup
- this.print(fName+': generating');
- config.formConfig.additionalData[queryName]=new Object();
-
- //takes address, so further changes will be to the newly created object
- //in fact, ad is just a short alias of the long variable name on the right
- let ad=config.formConfig.additionalData[queryName];
- //no additional data
- if (formSetupEntry["showFlag"]==="NONE") {
- this.print(fName+": empty");
- return ad;
- }
- //use showFlag to setup report section of the CRF list
- if (formSetupEntry["showFlag"]==="REVIEW") {
- //abuse additionalData to signal different segment
- this.print(fName+": generateReport");
- ad.isReview=true;
- return ad;
- }
- //setup the additionalData memory object
- this.print(fName+': setting values');
- ad.showFlag=formSetupEntry["showFlag"];
- ad.showFlagValue=formSetupEntry["showFlagValue"];
- ad.queryName=formSetupEntry["showQuery"];
- //for data queries, limit to present CRF only
- ad.filters=new Object();
- ad.filters['crfRef']=this.getCRFref();
- //compose a long debug message
- let msg=fName+": flag "+ad.showFlag;
- msg+=" value "+ad.showFlagValue;
- msg+=" query "+ad.queryName;
- this.print(msg);
- return ad;
- }
- crfVisit.selectFormSetupRows=
- function(formId){
- let formSetupRows=new Array();
- let config=this.config;
- let allRows=config.formConfig.formSetup.rows;
- for (let i=0;i<allRows.length;i++){
- let formEntry=allRows[i];
- if (formEntry.formName==formId)
- formSetupRows.push(formEntry);
- }
- return formSetupRows;
- }
- crfVisit.findTitle=
- function(queryName){
- //find by name from formDatasets
- //and set associated title as title
- let config=this.config;
- let rows=config.formConfig.formDatasets.rows;
- for (let i=0;i<rows.length;i++){
- let entry=rows[i];
- if (entry['queryName']!=queryName) continue;
- return entry['title'];
- }
- return "NONE";
- }
- crfVisit.makeSetup=
- function(listName){
- //generate setup object whcih should contain fields:
- //readonlyFlag - whether the dataset is writeable
- //filters - selection fields that allow creation of LABKEY.Filter.create()
- //getInputId - formating of unique ids for html elements
- let fName='[Setup]';
- this.print(fName+' '+listName);
- let setup=new Object();
- setup.queryName=listName;
- setup.readonlyFlag=function(vName){return false};
- setup.filters=new Object();
- setup.filters['crfRef']=this.getCRFref();
- setup.getInputId=function(vName){return listName+"_"+vName;}
- setup.isReview=false;
- return setup;
-
- }
- crfVisit.getFullAccessSetup=
- function(listName){
- //addApply - whether a submit/Save button is generated
- let setup=this.makeSetup(listName);
- setup.addApply="Save";
- return setup;
- }
- crfVisit.getReadonlySetup=
- function(listName){
- let setup=this.makeSetup(listName);
- //see definition of setup object above, change readonly flag
- setup.readonlyFlag=function(vName){return true};
- return setup;
- }
- crfVisit.getSetup=
- function(listName,writeAccess=true){
- //change to section granulated permission of type EDIT, COMMENT, READ
- //let formStatus=config.formConfig.formStatus;
- //equivalent to READ
- if (!writeAccess)
- //if (formStatus=="Submitted")
- return this.getReadonlySetup(listName);
- //if (formStatus=="Approved")
- // return readonlySetup(listName);
- return this.getFullAccessSetup(listName);
- }
- crfVisit.generateSection=
- function(formSetupEntry){
- let config=this.config;
- let that=this;
- let listName=config.formConfig.queryMap[formSetupEntry['queryName']];
- //if (!listName) is for debugSection
- if (!listName){
- listName="debugSection";
- }
- let fName='[generateSection/'+listName+']';
- let sectionTitle=formSetupEntry['title'];
- let accessModeColumn=config.formConfig.operator+'Mode';
- let accessMode=formSetupEntry[accessModeColumn];
- //this will fix it for later use as well
- let additionalData=this.getAdditionalData(formSetupEntry);
- this.print(fName);
- let formName=config.masterForm;//this is HTML designator of area on page
- let debug=true;
- let tb=config.document.createElement('table');
- tb.className='t2';
- let row=tb.insertRow();
- let cell=config.document.createElement('th');
- row.appendChild(cell);
- cell.setAttribute("colspan","4");
- cell.style.fontSize="20px";
- cell.style.textAlign="center";
- let cellData=config.document.createTextNode(sectionTitle);
- cell.appendChild(cellData);
- cell=row.insertCell();
- let input=config.document.createElement("input");
- input.type="button";
- input.value="Show";
- input.id="toggle"+listName+"VisbilityButton";
- input.onclick=function(){that.toggleVisibility(listName,input.id)};
- cell.appendChild(input);
- this.getElement(formName).appendChild(tb);
- let div=config.document.createElement('div');
- div.id=listName;
- div.style.display="none";
- this.getElement(formName).appendChild(div);
- //here divert for debugArea
- if (listName=="debugSection"){
- let debugArea=config.document.createElement('textarea');
- debugArea.rows=10;
- debugArea.cols=95;
- debugArea.id=config.debugId;
- div.appendChild(debugArea);
- return;
- }
- let divTable=config.document.createElement('div');
- divTable.id=listName+"Table";
- div.appendChild(divTable);
-
- if ("showFlag" in additionalData) {
- additionalData.divName=listName+"SubDiv";
- additionalData.divQueryName=listName+"SubDivList";
- let div1=config.document.createElement('div');
- div1.id=additionalData.divName;
- div1.style.display="none";
- div.appendChild(div1);
-
- let div2=config.document.createElement('div');
- div2.id=additionalData.divQueryName;
- div1.appendChild(div2);
- }
- this.print(fName+" generate master table");
- let writeMode=accessMode=="EDIT";
- let setup=this.getSetup(listName,writeMode);
-
- if ("isReview" in additionalData){
- crfReviewSection.set(this);
- let action=function(){crfReviewSection.CB();};
- crfReviewSection.generateSection(listName,div.id,action);
- return;
- }
- //master table is unique per visit
-
- setup.unique=true;
- this.generateTable(listName,divTable.id,additionalData,setup);
-
- if (debug) this.print("generate master table: done");
- let generateSubTable=true;
- //generateSubTable equivalent to read/write access to section
- if (accessMode != "EDIT")
- generateSubTable=false;
-
- if (! ("showFlag" in additionalData) ) generateSubTable=false;
-
- if (generateSubTable){
- let qName=additionalData.queryName;
- let dName=additionalData.divName;
-
- let xsetup=this.getFullAccessSetup(qName);
- //only set master query for additionalData
- xsetup.masterQuery=listName;
- //if (readonly) setup=readonlySetup(config);
- xsetup.subTable=true;
- this.generateTable(qName,dName,additionalData,xsetup);
- //generateTable(formSetupEntry,qName,dName,additionalData,setup);
- }
- this.print("generate review");
- let divReviewList=config.document.createElement('div');
- divReviewList.id=listName+"ReviewList";
- div.appendChild(divReviewList);
-
- let divReview=config.document.createElement('div');
- divReview.id=listName+"Review";
- div.appendChild(divReview);
- //assume we already have listId (content of config.setupQueryName is listId)
- //we need listName also
- //qconfig.queryName=config.setupQueryName;
- this.generateReview(divReview.id,divReviewList.id,listName,accessMode);
- if (accessMode!='GENERATE') return;
- this.print('Adding generate button');
- //add generateButton
- let divGenerateButton=config.document.createElement('div');
- divGenerateButton.id=listName+'GenerateButton';
- div.appendChild(divGenerateButton);
- this.print('Adding generate button completed to here');
- let cb=function(){that.onGenerateQuery(listName);};
- this.generateButton(divGenerateButton.id,'Generate','Generate '+listName,'onGenerateQuery',cb);
- this.print('Adding generate button completed');
- }
- crfVisit.generateReview=
- function(divReviewId,divReviewListId, listName, accessMode){
- let config=this.config;
- let listId=config.formConfig.fields[listName].queryId;
- //listId is a number->should it be queryName?
-
- let fName='[generateReview]';
- this.print(fName+" list "+listId+'/'+listName);
-
- let reviewSetup=new Object();
- reviewSetup.readonlyFlag=function(vName){
- if (vName=="queryName") return true;
- if (vName=="queryname") return true;
- if (vName=="ModifiedBy") return true;
- return false;};
- reviewSetup.addApply="Add Review";
- reviewSetup.reviewTable=true;
- let generateTableFlag=true;
- let formStatus=config.formConfig.formStatus;
- //COMMENTS allowed or not
- //three levels of access: EDIT, COMMENT, READ
- if (accessMode == "READ"){
- //if (formStatus == "Approved" ){
- delete reviewSetup.addApply;
- reviewSetup.readonlyFlag=function(vName){return false;}
- generateTableFlag=false;
- }
-
- reviewSetup.filters=new Object();
- reviewSetup.filters["crfRef"]=this.getCRFref();
- if (config.formConfig.crfEntry.parentCrf){
- reviewSetup.filters["crfRef"]=this.getCRFref()+";"+config.formConfig.crfEntry.parentCrf;
- }
- reviewSetup.filters["queryName"]=listId;//entry in reviewComments list is queryname, all in small caps
- //needs listName, in argument
-
- reviewSetup.getInputId=function(vName){return listName+"_add"+vName};
- reviewSetup.divReviewListId=divReviewListId;
- reviewSetup.isReview=true;
- let msg="Review: divId: "+divReviewId;
- msg+=" inputId: "+reviewSetup.getInputId;
- this.print(msg);
-
- this.updateListDisplay(divReviewListId,"reviewComments",reviewSetup.filters,true);
- if (! generateTableFlag) return;
-
- this.generateTable("reviewComments",divReviewId,new Object(),reviewSetup);
- }
- //>>>>>>>>>>trigger visibility of additional lists
- crfVisit.setListVisibility=
- function(input,setup,readonlyFlag){
- let config=this.config;
- let fName="[setListVisibility/"+setup.queryName+"]";
- this.print(fName);
- let additionalData=config.formConfig.additionalData[setup.queryName];
-
- let x = this.getElement(additionalData.divName);
- this.print(fName+": Div: "+x);
- x.style.display="none";
- let sText;
- if (readonlyFlag) sText=input.innerText;
- else sText=input.options[input.selectedIndex].text;
-
- this.print(fName+": Selected option text: "+sText);
- if (sText == additionalData.showFlagValue){
- let filters=new Object();
- if ("filters" in additionalData) filters=additionalData.filters;
- x.style.display = "block";
- this.updateListDisplay(additionalData.divQueryName,
- additionalData.queryName,filters,readonlyFlag);
- }
- }
- //>>have list refresh when data is added (not optimal yet)
- //
- crfVisit.updateListDisplay=
- function(divName,queryName,filters,readonlyFlag){
- //use Labkey.QueryWebPart to show list
- let fName="[updateListDisplay]";
- this.print(fName+": UpdateListDisplay: Query - "+queryName
- +" div - "+divName);
- if (divName=="NONE") return;
- let crfRef=this.getCRFref();
- let div=this.getElement(divName);
- this.print(fName+": generating WebPart: "+queryName);
-
- var qconfig=new Object();
- qconfig.renderTo=divName;
- //point to data container
- qconfig.containerPath=this.getContainer('data');
- qconfig.schemaName='lists';
- qconfig.queryName=queryName;
- qconfig.buttonBarPosition='top';
- qconfig.filters=[];
- for (f in filters){
- let fType=LABKEY.Filter.Types.EQUAL;
- this.print(fName+' filter ['+f+'] '+filters[f]+'/'+typeof(filters[f])+' ['+fType+']');
-
- if (variableList.isFilterList(filters[f])){
- fType=LABKEY.Filter.Types.IN;
- }
- qconfig.filters.push(LABKEY.Filter.create(f, filters[f],fType));
- }
- let that=this;
- qconfig.success=function(data){that.updateSuccess(data);};
- qconfig.failure=function(errorInfo,options,responseObj){that.onFailure(errorInfo,options,responseObj);};
- //show only print button
- if (readonlyFlag){
- qconfig.buttonBar=new Object();
- qconfig.buttonBar.items=["print"];
- }
- qconfig.showUpdateColumn=false;
- qconfig.showDetailsColumn=false;
- LABKEY.QueryWebPart(qconfig);
-
- }
- crfVisit.updateSuccess=
- function(data){
- this.print("Update success");
- }
- //TODO: this should trigger a data refresh on section, ie populateData(field)
- crfVisit.toggleVisibility=
- function(divName,buttonName){
- let fName='[toggleVisibility/'+divName+']';
- this.print(fName);
- let config=this.config;
- let x = this.getElement(divName);
- if (x.style.display === "none") {
- //exclude non data sections (like debug)...
- this.print(fName+': issuing setData(populateSection)');
- x.style.display = "block";
- this.getElement(buttonName).value="Hide";
- let that=this;
- let cb=function(){that.populateSection(divName);};
- this.setData(cb);
- } else {
- x.style.display = "none";
- this.getElement(buttonName).value="Show";
- }
- }
- crfVisit.generateButton=
- function(divName,caption,label,callbackLabel,callback=null){
- this.print("generateButtonX");
- let config=this.config;
-
- let tb=config.document.createElement('table');
- tb.className="t2";
-
- let r1=tb.insertRow();
- th=config.document.createElement('th');
- r1.appendChild(th);
- th.innerHTML=caption;
- //*!*
- let c2=r1.insertCell();
- let i1=config.document.createElement("input");
- i1.type="button";
- i1.value=label;
- i1.style.fontSize="20px";
- let that=this;
- if (callback)
- i1.onclick=callback;
- else
- i1.onclick=function(){that[callbackLabel]();};
- i1.id='button_'+callbackLabel;
- c2.appendChild(i1);
- let c1=r1.insertCell();
- c1.setAttribute("colspan","1");
- //this is only for saveReview?
- c1.id=divName+'_reportField';
- //c1.id=config.submitReportId;
- let el=this.getElement(divName);
- this.print("generateButton: element["+divName+"]: "+el);
-
-
- el.appendChild(tb);
-
-
- }
- crfVisit.generateSubQuery=
- function(input, setup, readonlyFlag){
- let fName="[generateSubQuery]";
- let config=this.config;
- if (setup.isReview) return;
- if (!(setup.queryName in config.formConfig.additionalData)){
- this.print(fName+': no additionalData entry (probably a subquery)');
- return;
- }
- let additionalData=config.formConfig.additionalData[setup.queryName];
- if (!("showFlag" in additionalData))
- return;
- this.print(fName);
-
- let expId=setup.getInputId(additionalData.showFlag);
- if (expId!=input.id) {
- this.print(fName+": ignoring field "+input.id+"/"+expId);
- return;
- }
- this.print(fName+": Setting onChange to "+input.id);
- if (readonlyFlag)
- return;
- let that=this;
- input.onchange=function(){that.setListVisibility(input,setup,readonlyFlag)};
- }
- //>>populate fields
- //
- //
- //split to field generation and field population
- //
- crfVisit.addFieldRow=
- function(tb,field,setup,additionalData){
- let fName="[addFieldRow/"+setup.queryName+':'+field.name+']';
- let config=this.config;
- let vName=field.name;
- let vType=field.type;
- let isLookup=("lookup" in field);
- this.print(fName+": ["+vName+"/"+vType+'/'+isLookup+"]");
- let row=tb.insertRow();
- let cell=config.document.createElement('th');
- cell.style.width='300px';
- row.appendChild(cell);
-
- let text = config.document.createTextNode(field.shortCaption);
- cell.appendChild(text);
-
-
- let input=null;
- let colSpan="3";
- let cell1=row.insertCell();
- cell1.colSpan=colSpan;
- let readonlyFlag=setup.readonlyFlag(vName);
- //set the html input object
- while (1){
- if (readonlyFlag){
- input=config.document.createElement('label');
- input.innerText='Loading';
- break;
- }
-
- //lookup
- if (isLookup){
- input = config.document.createElement("select");
- break;
- }
- //date
- if (vType=="date"){
- input = config.document.createElement("input");
- input.type="date";
- break;
- }
- //string
- if (vType=="string"){
- //we have to make sure UNDEF is carried to below
- //since we are adapting file to either show
- //current file or allow user to select a file
- //
- //TODO change this so one can always select file
- //but also show the selected file
- if(vName.search("reviewComment")>-1){
- input = config.document.createElement("textarea");
- input.cols="65";
- input.rows="5";
- break;
- }
- input=config.document.createElement('input');
- input.type="text";
-
- if (vName.search('_file_')<0) break;
- cell1.setAttribute('colspan',"1");
- let cell2=row.insertCell();
- cell2.setAttribute('colspan',"2");
- let input1=config.document.createElement('input');
- input1.type="file";
- input1.id=setup.getInputId(vName)+'_file_';
- cell2.appendChild(input1);
- break;
-
- }
- if (vType=="float"){
- input = config.document.createElement("input");
- input.type="text";
- break;
- }
-
-
- if (vType=="boolean"){
- input = config.document.createElement("input");
- input.type="checkbox";
- this.print("Creating checkbox");
- break;
- }
- break;
- }
-
- input.id=setup.getInputId(vName);
- cell1.appendChild(input);
- this.print(fName+': adding element '+input.id);
- this.print(fName+': listing element '+this.getElement(input.id));
-
- //connect associated list
- this.generateSubQuery(input,setup,readonlyFlag);
- if (readonlyFlag) {
- this.print(fName+': exiting(readonlyFlag)');
- return;
- }
-
- if (!isLookup) {
- this.print(fName+': exiting (not lookup)');
- return;
- }
- let lookup=field["lookup"];
- //get all values from config.formConfig.lookup[X]
- let lObject=config.formConfig.lookup[lookup.queryName];
-
- //debug
- this.print(fName+": query: "+lookup.queryName);
- this.print(fName+": ElementId: "+input.id);
- this.print(fName+": No of options: " +lObject.LUT.length);
- this.print(fName+": Element: "+input);
- //set the lut value (input is text label) for readonly
- //clear existing fields from input
- for(let i = input.options.length; i >= 0; i--) {
- input.remove(i);
- }
-
- //create option -1
- let opt = config.document.createElement("option");
- opt.text = "<Select>";
- opt.value = -1;
- input.options[0] = opt;
- this.print(fName+": Adding <Select>");
-
- //add other, label them with LUT
- for (let v in lObject.LUT) {
- this.print(fName+': populating '+v+': '+lObject.LUT[v]);
- let opt = config.document.createElement("option");
- opt.text = lObject.LUT[v];
- opt.value = v;
- input.options[input.options.length] = opt;
-
- }
- input.selectedIndex=0;
- }
- crfVisit.addSpecialFieldRows=
- function(tb,specFieldSetup,setup){
- //tb is the table, specFieldSetup is a row from the table where special fields are being setup
- //the first column is fieldUID, which is a colon joined amalgation of queryName:fieldName
- let fieldUID=specFieldSetup["fieldUID"];
- let x=fieldUID.split(':');
- let fieldName=x[1];
- let fName="[addSpecialFieldRow/"+fieldUID+"]";
- let q=variableList.parseVariables(specFieldSetup['actionParameters']);
- let config=this.config;//for add data
- this.print(fName);
- if (specFieldSetup['actionType']=='textArea'){
- let row=tb.insertRow();
- let cell1=row.insertCell();
- cell1.colSpan="4";
- cell1.style.textAlign="justify";
- cell1.style.padding="10px";
- cell1.style.backgroundColor="#e0e0e0";
- cell1.innerText=q['description'];
- return;
- }
- if (specFieldSetup['actionType']=='generationObject'){
- //only in EDIT mode!!
- let ro=setup.readonlyFlag(fieldName);
- if (ro) return;
- generateRegistration.set(this);
- let gc=generateRegistration.getObject(q,setup.getInputId(fieldName));
- let that=this;
- let action=function(){that.doNothing();};
- if ('mailRecipient' in q){
- gc.callback=function(data){that.sendEmail(data,q['mailRecipient'],action,q['subject']);};
- }
- else
- gc.callback=function(data){that.doNothing();};
- if ("addData" in q){
- vars=q["addData"].split(',');
- gc.addData=new Array();
- for (let v in vars){
- let s=vars[v]
- //variable name can be written as A/B where A is the name in addData and B is the variable name in crfEntry
- //useful for mocking up crfId from daughter crf-s such as registration
- let sArray=s.split('/');
- let sTarget=sArray[0];
- let sSource=sArray[sArray.length-1];
- gc.addData[sTarget]=config.formConfig.crfEntry[sSource];
- this.print(fName+" addData ["+sTarget+"]: "+gc.addData[sTarget]);
- }
- }
- let row=tb.insertRow();
- let cell=config.document.createElement('th');
- row.appendChild(cell);
- let text = config.document.createTextNode("Automatic ID generator");
- cell.appendChild(text);
- let cell1=row.insertCell();
- cell1.colSpan="3";
- let b=config.document.createElement("input");
- b.type="button";
- b.id="generateIdButton";
- b.onclick=function(){generateRegistration.execute(gc);};
- b.value="Generate ID";
- cell1.appendChild(b);
- }
- }
- crfVisit.populateFieldRow=
- function(entry,field,setup){
- this.populateField(entry,field,setup);
- this.populateSubQuery(entry,field,setup);
- }
- crfVisit.populateSubQuery=
- function(entry,field,setup){
- let fName='[populateSubQuery/'+setup.queryName+':'+field.name+']';
- let config=this.config;
- if (setup.isReview) return;
-
- if (!(setup.queryName in config.formConfig.additionalData)){
- let msg=fName+': no additionalData entry for '+setup.queryName;
- msg+=' (probably a subquery)';
- this.print(msg);
- return;
- }
- //find if field is connected to a sub array
- //find queryName
- //
- let additionalData=config.formConfig.additionalData[setup.queryName];
- this.print(fName);
- //let flag=additionalData.showFlag;
-
- if (!("showFlag" in additionalData)) return;
- let eId=setup.getInputId(additionalData.showFlag);
- let id=setup.getInputId(field.name);
-
- if (eId!=id) {
- this.print(fName+": ignoring field "+id+"/"+eId);
- return;
- }
-
- this.print(fName+': id '+id);
- //hard to estimate readonlyFlag
- //
- let input=this.getElement(id);
- let eType=input.nodeName.toLowerCase();
- let readonlyFlag=eType!="select";
- this.setListVisibility(input,setup,readonlyFlag);
- }
- crfVisit.clearField=
- function(field,setup){
- let foo=new Object();
- this.populateField(foo,field,setup);
- }
- crfVisit.populateField=
- function(entry,field,setup){
- let vName=field.name;
- let fName='[populateFieldName/'+vName+']';
- let config=this.config;
- let varValue="UNDEF";
- //if (vName in setup.filters) varValue=setup.filters[vName];
- if (vName in entry) varValue=entry[vName];
- //if part of the filter, set it to value
- if (vName in setup.filters) varValue=setup.filters[vName];
-
- let isLookup=("lookup" in field);
-
- this.print(fName+' v='+varValue+'/'+isLookup+' ['+
- setup.getInputId(field.name)+']');
-
- let vType=field.type;
- let id=setup.getInputId(vName);
- let input=this.getElement(id);
-
- //date
- if (vType=="date"){
- if (varValue=="UNDEF") varValue=new Date();
- else varValue=new Date(varValue);
- }
-
- //lookup for readonly
- if (isLookup && varValue!="UNDEF"){
- let lookup=field["lookup"];
- //get all values from config.formConfig.lookup[X]
- let lObject=config.formConfig.lookup[lookup.queryName];
- varValue=lObject.LUT[varValue];
- }
- this.print('Element: '+input);
- //figure out the element type
- let eType=input.nodeName.toLowerCase();
- this.print('Element type: '+eType);
- //change varValue for printing
- if (varValue=="UNDEF") varValue="";
- //HTMLTextArea, createElement(textArea)
- if (eType==="textarea"){
- input.value=varValue;
- return;
- }
- //Text, createTextNode
- if (eType==="#text"){
- input.nodeValue=varValue;
- return;
- }
- //HTMLLabelElement, createElement('label')
- if (eType==="label"){
- input.innerText=varValue;
- return;
- }
- //HTMLSelectElement, createElement('select')
- if (eType==="select"){
- input.selectedIndex=0;
- for (let i=0;i<input.options.length;i++){
- let v=input.options[i].text;
- if (v!=varValue) continue;
- input.selectedIndex=i;
- break;
- }
- return;
- }
- if (eType!="input"){
- this.print('Unknown type: '+eType+' encountered, igonring');
- return;
- }
-
- //HTMLInputElement
- let type=input.type;
- if (type=="date"){
- input.valueAsDate=varValue;
- return;
- }
- //string,float
- if (type=="text"){
- input.value=varValue;
- return;
- }
- //boolean
- if (type=="checkbox"){
- input.checked=varValue;
- return;
- }
- this.print('Unknown input type: '+type+'. Ignoring.');
- }
- crfVisit.populateTable=
- function(listName,writeMode){
- //function populateTable(formSetupEntry){
- //let listName=config.formConfig.queryMap[formSetupEntry['queryName']];
- //let accessMode=config.formConfig.operator+'Mode';
- //let writeMode=formSetupEntry[accessMode]=='EDIT';
- let fName='[populateTable/'+listName+']';
-
- let setup=this.getSetup(listName,writeMode);
- let entry=new Object();
-
- //data snapshot
- let fQuery=this.getQuerySnapshot(listName);
- let queryLayout=this.getQueryLayout(listName);
- //here I assume that listName was parsed during setDataLayout and setData
- //so that rows was set (even if they are empty)
- this.print(fName+"]: nrows "+fQuery.rows.length);
-
- if (fQuery.rows.length>0)
- entry=fQuery.rows[0];
-
- let fields=queryLayout.fields;
-
- for (f in fields){
- let field=fields[f];
- //each field is a new row
- this.print(fName+": Adding field: "+f+'/'+field.name+' hidden: '+field.hidden+' type:'+field.type);
- if (field.hidden) continue;
- if (field.name=="crfRef") continue;
- this.populateFieldRow(entry,field,setup);
-
- }
- }
- crfVisit.generateTable=
- function(listName,divName,additionalData,setup){
- let fName="[generateTable/"+listName+"]";
- let config=this.config;
- this.print(fName);
- //is listName and setup.queryName a duplicate of the same value
- this.print(fName+': setup.queryName '+setup.queryName);
- //assume data is set in config.formConfig.dataQueries[data.queryName].rows;
- let populateData=true;
- if ("subTable" in setup){
- this.print(fName+" is subTable");
- populateData=false;
- }
- let entry=new Object();
- //data snapshot
- let fQuerySnapshot=this.getQuerySnapshot(listName);
- let queryLayout=this.getQueryLayout(listName);
- //here I assume that listName was parsed during setDataLayout and setData
- //so that rows was set (even if they are empty)
- this.print(fName+": Nrows "+fQuerySnapshot.rows.length);
-
- if (fQuerySnapshot.rows.length>0)
- entry=fQuerySnapshot.rows[0];
-
- if ("reviewTable" in setup){
- entry['reviewComment']='';
- delete entry["ModifiedBy"];
- }
-
- let tb=config.document.createElement('table');
- tb.className="t2";
- this.getElement(divName).appendChild(tb);
- //this are the fields (probably constant)
- let fields=queryLayout.fields;
-
- for (f in fields){
- let field=fields[f];
- let fieldUID=listName+":"+field.name;
- //each field is a new row
- this.print(fName+": Adding field: "+f+'/'+field.name+' ('+fieldUID+').');
- //unique name
- if (field.hidden) continue;
- if (field.name=="crfRef") continue;
- this.addFieldRow(tb,field,setup,additionalData);
- if (populateData) this.populateFieldRow(entry,field,setup);
- if (fieldUID in config.formConfig["specialFields"]){
- let specFieldSetup=config.formConfig["specialFields"][fieldUID];
- this.addSpecialFieldRows(tb,specFieldSetup,setup);
- }
-
- }
- //finish of if apply button is not required
- if (!("addApply" in setup)) {
- this.print(fName+"populateTable: done");
- return;
- }
-
- let row=tb.insertRow();
- let th=config.document.createElement('th');
- row.appendChild(th);
- th.innerHTML=setup.addApply;
- let cell=row.insertCell();
- //cell.setAttribute("colspan","2");
- let input=config.document.createElement("input");
- input.type="button";
- input.value=setup.addApply;
- cell.appendChild(input);
- let cell1=row.insertCell();
- cell1.setAttribute("colspan","2");
- cell1.id=setup.getInputId("rerviewLastSave");
- cell1.innerHTML="No recent update";
- //saveReview is a generic name for saving content of the html page to a list entry
- let that=this;
- input.onclick=function(){that.saveReview(listName,cell1.id,setup)};
- }
- crfVisit.setEntryFromElement=
- function(entry,elementId, field){
- //set value to entry from element using representation (field) from labkey
- //
- //
-
- let fName='setEntryFromElement';
- let config=this.config;
- let el=this.getElement(elementId);
-
- if (!el) {
- this.print(fName+" element: "+elementId+" not found");
- return;
- }
- this.print(fName+" element: "+elementId);
-
- let vName=field.name;
- let vType=field.type;
- let eType=el.nodeName.toLowerCase();
- if (eType==="select"){
- entry[vName]=el.options[el.selectedIndex].value;
- return;
- }
- if (eType==="td"){
- entry[vName]=el.innerText;
- return;
- }
-
- if (vType=="date"){
- let date=el.valueAsDate;
- if (!date) return;
- date.setUTCHours(12);
- entry[vName]=date.toString();
- this.print(fName+" setting date to "+entry[vName]);
- return;
- }
- if (vType=="string"){
- entry[vName]=el.value;
-
- if (vName.search('_file_')<0)
- return;
-
- //upload file
- let id1=elementId+'_file_';
- let input1=this.getElement(id1);
- this.print(fName+' attachment field: '+input1.value);
- //entry[vName]=el.files[0].stream();
- let ctx=new Object();
- ctx['dirName']='consent';
- ctx['ID']=entry['crfRef'];
- //should point to data container
- ctx['project']=getContainer('data');
- //need ID->crf!
- //assume crfRef will get set before this
- //element is encountered
- this.uploadFile(input1,ctx);
- let fv=el.value;
- let suf=fv.split('.').pop();
- entry[vName]=entry['crfRef']+'.'+suf;
- return;
-
- }
- if (vType=="float" || vType=="int"){
- entry[vName]=el.value;
-
- if (vName=="queryName") {
- this.print(fName+' parsing queryName: '+el.innerText);
- entry[vName]=config.formConfig.fields[el.innerText].queryId;
- //use queryMap lookup
- }
- return;
- }
- if (vType=="boolean"){
- entry[vName]=el.checked;
- return;
- }
- return;
- }
- crfVisit.saveReview=
- function(queryName,elementId,setup){
- //loads any queryName
- let debug=true;
- let fName='[saveReview/'+queryName+']';
- this.print(fName+" elementId "+elementId);
- let unique=("unique" in setup);
-
- //data snapshot
- let fQuerySnapshot=this.getQuerySnapshot(queryName);
- let nRows=fQuerySnapshot.rows.length;
-
- let mode='insert';
-
- //data layout
- let queryLayout=this.getQueryLayout(queryName);
- let entry=new Object();
-
- //determine mode based on entry uniqueness and presence of data
- if (unique && nRows>0){
- entry=fQuerySnapshot.rows[0];
- mode='update';
- }
- this.print(fName+' unique '+unique+' mode '+mode+' nRows '+nRows);
- entry.crfRef=this.getCRFrefData();
- this.print(fName+" set crfRef="+entry.crfRef);
- let fields=queryLayout.fields;
- for (f in fields){
- let field=fields[f];
- this.print(fName+" saveReview field: "+field.name);
- if (field.hidden) continue;
-
- let vName=field.name;
- let vType=field.type;
- this.print(fName+" vType: "+vType);
-
- if (vName=="crfRef") continue;
- //need to save queryName for reviewComments
-
- let eId=setup.getInputId(vName);
- //copy values from form to entry
- this.setEntryFromElement(entry,eId,field);
- //clear field value
- if (!unique) this.clearField(field,setup);
- }
- let that=this;
- let action=function(data){that.updateLastSavedFlag(data,setup,elementId)};
- this.modifyRows(mode,'lists',queryName,[entry],action,this.getContainer('data'));
- }
- crfVisit.updateLastSavedFlag=
- function(data,setup,elementId){
- let fName='[updateLastSavedFlag]';
- let config=this.config;
- this.print(fName+" update last saved flag to "+elementId);
- let el=this.getElement(elementId);
- let dt=new Date();
- el.innerHTML="Last saved "+dt.toString();
- if (data.queryName=="reviewComments"){
- this.updateListDisplay(setup.divReviewListId,"reviewComments",setup.filters,true);
- }
- //refresh stored data!
- let writeMode=!setup.readonlyFlag();
- let that=this;
- if ("unique" in setup)
- this.setData(function (){that.populateTable(data.queryName,writeMode);});
- if ("masterQuery" in setup){
- let ad=config.formConfig.additionalData[setup.masterQuery];
- this.print('Updating list display: '+setup.queryName+'/'+ad.queryName);
- this.updateListDisplay(ad.divQueryName,ad.queryName,ad.filters,false);
- }
- }
- //******************************************upload to database *********************
- crfVisit.onDatabaseUpload=
- function(){
- let fName='[onDatabaseUpload]';
- this.print(fName);
- let config=this.config;
- config.upload=new Object();
- let fc=new Object();
- let pM=this.getIdManager();
- fc.participantId=participantIdManager.getParticipantIdFromCrfEntry(pM);
- this.print(fName+' id '+fc.participantId);
- this.afterParticipantId(fc);
- }
- crfVisit.afterParticipantId=
- function(fc){
- this.print("Setting participantId to "+fc.participantId);
- let config=this.config;
- config.upload.participantId=fc.participantId;
- //another select rows to update all queries from setup
- //just use registration for test
- let formSetupRows=config.formConfig.formSetupRows;
- config.upload.queries=new Array();
- this.print("Form rows: "+formSetupRows.length);
- for (let i=0;i<formSetupRows.length;i++){
- let entry=formSetupRows[i];
- //skip reviews
- if (entry.showFlag=="REVIEW") continue;
- //use lookup table to convert from id to name
- let queryName=config.formConfig.queryMap[entry.queryName];
- config.upload.queries.push({queryName:queryName,queryStatus:"QUEUED"});
- this.print('form ['+i+']='+queryName+' '+entry.showFlag+'/'+entry.showQuery);
- if (entry.showQuery=="NONE")
- continue;
- config.upload.queries.push({queryName:entry.showQuery,queryStatus:"QUEUED"});
- }
- //add reviews
- config.upload.queries.push({queryName:"reviewComments",queryStatus:"QUEUED"});
- config.upload.queryId=0;
- this.copyToDataset();
- }
- crfVisit.copyToDataset=
- function(){
- let fName='[copyToDataset]: ';
- let config=this.config;
- this.print(fName+'['+config.upload.queryId+'/'+config.upload.queries.length+']');
- //watch dog + scheduler
- //
-
- let that=this;
- //watchdog part
- if (config.upload.queryId==config.upload.queries.length) {
- this.print(fName+'completing');
- let targetStatus=config.formConfig.targetStatus['onDatabaseUpload'];
- let targetRecipient=config.formConfig.targetRecipient['onDatabaseUpload'];
- let action=new Object();
- action.name='onDatabaseUpload';
- let redirect=function(){that.redirect();};
- action.cb=function(data){that.sendEmail(data,targetRecipient,redirect,'Form uploaded');}
- this.updateFlag(targetStatus,action);//Approved
- return;
- }
- //scheduler
- let queryName=config.upload.queries[config.upload.queryId].queryName;
- this.print("copyToDataset["+config.upload.queryId+"/"+
- config.upload.queries.length+"]: "+queryName);
- let filters=[LABKEY.Filter.create('crfRef',this.getCRFref())];
- let action=function(data){that.afterListData(data);};
- this.selectRows('lists',queryName,filters,action,this.getContainer('data'));
- }
- crfVisit.afterListData=
- function(data){
- let fName='[afterListData]: ';
- let config=this.config;
- let queryName=config.upload.queries[config.upload.queryId].queryName;
- this.print(fName+" ["+queryName+"/list]: "+data.rows.length+" entries");
- config.upload.queries[config.upload.queryId].listData=data;
- let id=config.upload.participantId;
- let filters=[LABKEY.Filter.create('crfRef',this.getCRFref()),LABKEY.Filter.create('ParticipantId',id)];
- let that=this;
- let action=function(data){that.afterStudyData(data);};
- this.selectRows('study',queryName,filters,action,this.getContainer('data'));
- }
- crfVisit.afterStudyData=
- function(data){
- let fName='[afterStudyData]: ';
- let config=this.config;
- let queryObj=config.upload.queries[config.upload.queryId];
- queryObj.studyData=data;
- let msg=fName+"["+queryObj.queryName+"/study]: "+data.rows.length+" entries";
- this.print(msg);
-
- let listRows=queryObj.listData.rows;
- //skip uploading an empty set
- if (listRows.length==0){
- this.printErr("List "+queryObj.queryName+" empty.");
- queryObj.queryStatus="DONE";
- config.upload.queryId+=1;
- //back to watchdog
- this.copyToDataset();
- return;
- }
-
- let studyRows=queryObj.studyData.rows;
- for (let i=0;i<studyRows.length;i++){
- let entry=studyRows[i];
- //
- if (! (i<listRows.length) ) continue;
- let entryList=listRows[i];
- //keeps study only variables (ParticipantId, SequenceNum)
- for (let f in entryList) {
- entry[f]=entryList[f];
- this.print(fName+"Copying ["+f+"]: "+entry[f]+"/"+entryList[f]);
- }
- }
- this.print(fName+' copying completed');
- if (studyRows.length>0) {
- let that=this;
- let action=function(data){that.afterStudyUpload(data);};
- this.modifyRows('update','study',queryObj.queryName,studyRows,action,this.getContainer('data'));
- this.print(fName+'updateRows sent');
- }
- else{
- let data=new Object();
- data.rows=new Array();
- this.afterStudyUpload(data);
- }
- }
- crfVisit.afterStudyUpload=
- function(data){
- let fName='[afterStudyUpload] ';
- let config=this.config;
- let that=this;
- this.print(fName);
- //let participantField=config.participantField;
- let participantField=config.formConfig.studyData["SubjectColumnName"];
- this.print(fName+' participantField: '+participantField);
- let queryObj=config.upload.queries[config.upload.queryId];
- let queryName=queryObj.queryName;
- this.printErr("Updated "+data.rows.length+" rows to "+queryName);
-
- let studyRows=queryObj.studyData.rows;
- let listRows=queryObj.listData.rows;
-
- let rows=new Array();
- //also updating existing rows, if they exist
- for (let i=studyRows.length;i<listRows.length;i++){
- let entry=listRows[i];
- //make sure you have the participantField right
- //
- entry[participantField]=config.upload.participantId;
- entry.crfRef=this.getCRFref();
- entry.SequenceNum=this.getCRFref();
- entry.SequenceNum=entry.SequenceNum % 1000000000;
-
- if (listRows.length>1){
- entry.SequenceNum+=i/100;
- }
- this.print( "Adding sequence number "+entry.SequenceNum);
- rows.push(entry);
- }
- if (rows.length>0){
- let action=function(data){that.afterListUpload(data);};
- this.insertRows('study',queryName,rows,action,this.getContainer('data'));
- }
- else{
- let data=new Object();
- data.rows=rows;
- this.afterListUpload(data);
- }
-
- }
- crfVisit.afterListUpload=
- function(data){
- let config=this.config;
- let queryObj=config.upload.queries[config.upload.queryId];
- let queryName=queryObj.queryName;
- this.printErr("Inserted "+data.rows.length+" rows to "+queryName);
- queryObj.queryStatus="DONE";
- config.upload.queryId+=1;
- this.copyToDataset();
- }
- //*************************update for further review *************************
- crfVisit.onUpdateForReview=
- function(){
- let config=this.config;
- let targetStatus=config.formConfig.targetStatus['onUpdateForReview'];
- let targetRecipient=config.formConfig.targetRecipient['onUpdateForReview'];
- let action=new Object();
- action.name='onUpdateForReview';
- let that=this;
- let redirect=function(){that.redirect();};
- action.cb=function(data){that.sendEmail(data,targetRecipient,redirect,'Form updated for review');};
- this.updateFlag(targetStatus,action);
- }
- crfVisit.updateFlag=
- function(flag,action){
- let fName='[updateFlag 1]';
- let config=this.config;
- let entry=config.formConfig.crfEntry;
- entry.FormStatus=flag;
- let uId=config.formConfig.currentUser.UserId;
- entry[config.formConfig.operator]=uId;
- this.print(fName+': Form: '+entry.Form);
- this.print(fName+": set form status to "+entry.FormStatus);
- let that=this;
- let cb=function(data){that.completeWithFlag(data,action);};
- this.modifyRows('update','lists','crfEntry',[entry],cb,this.getContainer('data'));
-
- }
- crfVisit.completeWithFlag=
- function(data,action){
- let fName='[completeWithFlag]';
- this.print(fName+': nrows '+data.rows.length);
- let fentry=data.rows[0];
- this.print(fName+': form status '+fentry.FormStatus);
- this.print(fName+': form '+fentry.Form);
- let crfStatus=this.createCrfStatus(fentry);
- let config=this.config;
- crfStatus.operator=config.formConfig.operator;
- crfStatus.action=action.name;
- let that=this;
- let cb=function(){that.doNothing();};
- if (action.cb) cb=action.cb;
- this.insertRows('lists','crfStatus',[crfStatus],cb,this.getContainer('data'));
- }
- //************************************************ submit *******************************************
- crfVisit.onSubmit=
- function(){
- //update list storage and change status
- this.hideErr();
- this.clearErr();
- this.printErr("onSubmit");
- let that=this;
- let action=function(){that.verifyData();};
- this.setData(action);
-
- }
- crfVisit.verifyData=
- function(){
- let fName='[verifyData]';
- let config=this.config;
- let qList=this.getQueryList();
- let that=this;
- let doNothing=function(data){that.doNothing();};
- for (q in qList){
- let qData=this.getQuerySnapshot(q);
- if (q=="reviewComments") continue;
- //copy snapshot to history
- if (qData.rows.length==0){
- this.print(fName+' no rows for '+q);
- }
- else
- this.insertRows('lists',q+'History',qData.rows,doNothing,this.getContainer('data'));
- //if it doesn't have additionalData, it is a sub query
- if (!(q in config.formConfig.additionalData)){
- continue;
- }
- if (qData.rows.length<1){
- this.printErr('Missing entry for query '+q);
- return false;
- }
- }
- //this is necessary only for Generated to Generation completed step
- let actionSettings=config.formConfig.actionSettings['onSubmit'];
- if (variableList.hasVariable(actionSettings,"updateRegistration")){
- this.updateRegistration();
- }
- let targetStatus=config.formConfig.targetStatus['onSubmit'];
- let targetRecipient=config.formConfig.targetRecipient['onSubmit'];
- this.print(fName+' targetStatus: '+targetStatus);
-
- let finalStep=function(){that.redirect();};
- if (variableList.hasVariable(actionSettings,"finalStep")){
- //set to doNothing to remain on submit window
- if (actionSettings.finalStep=="doNothing"){
- finalStep=doNothing;
- }
- }
-
- let action=new Object();
- action.name='onSubmit';
- action.cb=function(data){that.sendEmail(data,targetRecipient,finalStep,'Form sumbitted');};
- this.updateFlag(targetStatus,action);
- }
- crfVisit.getEmail=
- function(recipientCode){
- this.print('getEmail w/'+recipientCode);
- let config=this.config;
- let recipients=new Array();
- let typeTo=LABKEY.Message.recipientType.to;
- let create=LABKEY.Message.createRecipient;
- let currentUser=config.formConfig.currentUser;
- let formCreator=config.formConfig.formCreator;
- let currentSite=config.formConfig.currentSite;
- let userRows=config.formConfig.userRows;
- let parentUser=undefined;
- if ("parentCrfData" in config.formConfig){
- let parentCrf=config.formConfig.parentCrfData;
- parentUser=this.getUser(parentCrf.rows[0].UserId,'parentUser');
- }
-
- let recipientCategories=recipientCode.split(',');
- for (let i=0;i<recipientCategories.length;i++){
- let recipient=recipientCategories[i];
- this.print('Checking '+recipient);
- if (recipient=='crfEditor'){
- this.print('Adding :'+formCreator.Email);
- recipients.push(create(typeTo,formCreator.Email));
- if (parentUser==undefined) continue;
- this.print('Adding :'+parentUser.Email);
- recipients.push(create(typeTo,parentUser.Email));
- continue;
- }
- //Monitor or Sponsor
- let fList=recipient+'s';
- let fRows=config.formConfig[fList];
- for (let i=0;i<fRows.length;i++){
- this.print('Checking '+fRows[i].User+'/'+fRows[i].Site);
- if (fRows[i].Site!=currentSite.siteNumber) continue;
- for (let j=0;j<userRows.length;j++){
- if (userRows[j].UserId!=fRows[i].User) continue;
- this.print('Adding :'+userRows[j].Email);
- recipients.push(create(typeTo,userRows[j].Email));
- break;
- }
- }
- }
- return recipients;
- }
- crfVisit.sendEmail=
- function(data,recipient='crfEditor',cb=null,subj='Form submitted'){
- this.print('sendEmail; recipient: '+recipient);
- let config=this.config;
- let that=this;
- if (!cb)
- cb=function(){that.redirect();};
- let st=config.formConfig.settings;
- let cvar='sendEmail';
- if (cvar in st){
- this.print(cvar+' set to '+st[cvar]);
- if (st[cvar]=='FALSE'){
- this.print('Skipping sending emails');
- cb();
- return;
- }
- }
- if (recipient==null){
- this.print('Skipping sending emails w/ no recipients');
- cb();
- return;
- }
- this.print('send email '+data.rows.length);
- let crf=data.rows[0]['entryId'];
- let formId=data.rows[0]['Form'];
- let link=LABKEY.ActionURL.getBaseURL();
- link+=LABKEY.ActionURL.getContainer();
- link+='/crf_tecant-visit.view?';
- link+='entryId='+crf;
- link+='&formId='+formId;
- link+='&role='+recipient;
- //debug
- let recipients=this.getEmail(recipient);
- //from crfManagers list
-
- let typeHtml=LABKEY.Message.msgType.html;
- let typePlain=LABKEY.Message.msgType.plain;
- let msg1=LABKEY.Message.createMsgContent(typePlain,link);
- //let cb=doNothing;
- //let cb=redirect;
- LABKEY.Message.sendMessage({
- msgFrom:'labkey@fmf.uni-lj.si',
- msgSubject:subj,
- msgRecipients:recipients,
- msgContent:[msg1],
- success: cb
- });
- }
- crfVisit.hideErr=
- function(){
- let el=this.getElement("errorDiv");
- el.style.display="none";
- }
- crfVisit.clearErr=
- function(){
- let el=this.getElement("errorTxt");
- el.value="";
- }
- crfVisit.showErr=
- function(){
- let el=this.getElement("errorDiv");
- el.style.display="block";
- }
- crfVisit.printErr=
- function(msg){
- this.showErr();
- el=this.getElement("errorTxt");
- el.style.color="red";
- el.value+="\n"+msg;
- }
- //**************************************************
- //
- crfVisit.onRemoveCRF=
- function(){
- let fName='[onRemoveCRF]';
- let config=this.config;
- config.inputListsIterator=0;
- this.print(fName+' starting loop');
- //let rd=function(data){redirect();};
- //let cb=function(){cvInsertRows('lists','crfStatus',[crfStatus],rd,getContainer('data'));};
- let that=this;
- let action=function(){that.redirect();};
- let cb=function(){that.removeCrfEntries(action);};
- this.removeCRFLoop(cb);
- }
- crfVisit.removeCRFLoop=
- function(cb){
- let fName='[removeCRFLoop()]';
- let config=this.config;
- let that=this;
- let i=config.inputListsIterator;
- let iMax=config.formConfig.inputLists.rows.length;
- //in fact, we are adding two additional passages of the loop, one for
- //crfEntry, the second for the same query, but using parentCrf as the
- //selection variable
- //let iTotal=iMax+1;
- //let iTotal=iMax+1;
- //
- let actionSettings=config.formConfig.actionSettings['onRemoveCRF'];
- let queryNameDeleteWithParentCrf='NONE';
- if (variableList.hasVariable(actionSettings,'removeWithParentCrf')){
- queryNameDeleteWithParentCrf=actionSettings['removeWithParentCrf'];
- }
-
- this.print(fName+" ["+i+"/"+iMax+"]");
- if (!(i<iMax)){
- cb();
- return;
- }
- //in all but crfEntry, variable is called crfRef
- let queryName=config.formConfig.inputLists.rows[i].queryName;
- let idVar="crfRef";
- let idValue=config.formConfig.crfEntry['entryId'];
- //delete also crfEntries where parentCrf is set to crf that we are deleting
- if (queryNameDeleteWithParentCrf==queryName){
- idValue=config.formConfig.crfEntry['parentCrf'];
- }
-
- this.print(fName+" ["+i+"/"+iMax+"] "+queryName+":"+idVar+'/'+idValue);
- let filters=[LABKEY.Filter.create(idVar,idValue)];
- let action=function(data){that.removeListCRF(data,cb);};
- let failure=function(errorInfo){that.skipListCRF(errorInfo,cb);};
- this.selectRows('lists',queryName,filters,action,this.getContainer('data'),failure);
- //selectRows.failure=skipListCRF;
- }
- crfVisit.removeListCRF=
- function(data,cb){
- let fName="[removeListCRF]";
- let config=this.config;
- let that=this;
- this.print(fName+" "+data.queryName+": "+data.rows.length);
- config.inputListsIterator+=1;
-
- if (data.rows.length==0){
- this.removeCRFLoop(cb);
- return;
- }
- let action=function(data){that.removeCRFLoop(cb)};
- this.deleteRows(data.schemaName,data.queryName,data.rows,action,this.getContainer('data'));
-
- }
- crfVisit.skipListCRF=
- function(errorInfo,cb){
- let fName='[skipListCRF]';
- this.print(fName+" error in removeCRF: "+errorInfo.exception);
- let config=this.config;
- config.inputListsIterator+=1;
-
- this.removeCRFLoop(cb);
-
- }
- crfVisit.removeCrfEntries=
- function(cb){
- let queryName="crfEntry";
- let idVar="entryId";
- let crfRef=this.getCRFref();
- let that=this;
- let filters=[LABKEY.Filter.create('entryId',crfRef)];
- let action=function(data){that.deleteAndUpdateCrfStatus(data,null);}
- this.selectRows('lists',queryName,filters,action,this.getContainer('CRF'));
- let action1=function(data){that.deleteAndUpdateCrfStatus(data,cb);}
- let filters1=[LABKEY.Filter.create('parentCrf',crfRef)];
- this.selectRows('lists',queryName,filters1,action1,this.getContainer('CRF'));
- }
- crfVisit.deleteAndUpdateCrfStatus=
- function(data,cb){
- let fName='[deleteAndUpdateCrfStatus]';
- let config=this.config;
- let that=this;
- let rows=data.rows;
- let stack=new Array();
- stack.push(cb);
- for (let i=0;i<rows.length;i++){
- //generate crfStatus entry out of crfEntry
- let crfStatus=this.createCrfStatus(rows[i]);
- crfStatus.action='onRemoveCRF';
- crfStatus.FormStatus=config.formConfig.targetStatus[crfStatus.action];
- this.print(fName+' status '+crfStatus.FormStatus);
- crfStatus.operator=config.formConfig.operator;
- let k=stack.length-1;
- let containerPath=this.getContainer('CRF');
- stack.push(function(){that.insertRows('lists','crfStatus',[crfStatus],stack[k],containerPath);});
- let k1=k+1;
- stack.push(function(){that.deleteRows('lists','crfEntry',[rows[i]],stack[k1],containerPath);});
- }
- //execute the whole stack
- let m=stack.length-1;
- stack[m]();
- }
- crfVisit.redirect=
- function(){
- let debug=false;
- let formUrl="begin";
- let params=new Object();
- params.name=formUrl;
- params.pageId="CRF";
- //points to crf container
- let containerPath=this.getContainer('CRF');
-
- // This changes the page after building the URL.
- //Note that the wiki page destination name is set in params.
-
- var homeURL = LABKEY.ActionURL.buildURL(
- "project", formUrl , containerPath, params);
- this.print("Redirecting to "+homeURL);
- if (debug) return;
- window.location = homeURL;
-
- }
- //master section, entry point from html files
- crfVisit.generateMasterForm=
- function(){
- let that=this;
- let action=function(){that.setFormConfig();}
- this.init(action);
- }
- //helper function to set basic parameters on web page
- //(fields defined in html file)
- crfVisit.populateBasicData=
- function(){
- let staticData=new Object();
- let titles=new Object();
- let config=this.config;
- staticData['version']=config.formConfig.softwareVersion;
- titles['version']='Software version';
- let varRows=config.formConfig['crfStaticVariables'].rows;
- for (let i=0;i<varRows.length;i++){
- let vName=varRows[i].staticVariable;
- let val=config.formConfig.crfEntry[vName];
- if (val==undefined) continue;
- staticData[vName]=val;
- titles[vName]=varRows[i].Title;
- }
- staticData['investigatorName']=config.formConfig.user['DisplayName'];
- titles['investigatorName']='Investigator';
- staticData['email']=config.formConfig.user['Email'];
- titles['email']='Email';
- staticData['siteName']=config.formConfig.currentSite['siteName'];
- titles['siteName']='Site';
- staticData['sitePhone']=config.formConfig.currentSite['sitePhone'];
- titles['sitePhone']='Telephone(site)';
- for (f in staticData){
- this.addStaticData(f,titles[f],staticData[f]);
- }
- }
- crfVisit.addStaticData=
- function(f,title,value){
- let el=this.getElement(f);
- //populate only
- if (el!=undefined){
- el.innerText=value;
- return;
- }
-
- //add row to table if element cannot be found
- let table=this.getElement('staticTable');
- let row=table.insertRow();
- let cell=row.insertCell();
- cell.innerText=title;
- let cell1=row.insertCell();
- cell1.id=f;
- cell1.style.fontWeight='bold';
- //populate
- cell1.innerText=value;
- }
- //come here after the layout is read from labkey page
- //
- crfVisit.generateErrorMsg=
- function(msg){
- let config=this.config;
- let txt=config.document.createElement('p');
- txt.innerText=msg;
- this.getElement(config.masterForm).appendChild(txt);
- this.generateButton("submitDiv",'Exit','Exit','redirect');
- }
- crfVisit.getUser=
- function(id,field){
- let config=this.config;
- if (field in config.formConfig) return config.formConfig[field];
- let uRows=config.formConfig.userRows;
- for (let i=0;i<uRows.length;i++){
- let userId=uRows[i].UserId;
- if (userId!=id) continue;
- config.formConfig[field]=uRows[i];
- return config.formConfig[field];
- }
- return null;
- }
- crfVisit.afterConfig=
- function(){
- let fName='[afterConfig]';
- let config=this.config;
- this.print(fName);
-
- this.populateBasicData();
-
- //check if user has permission on the form
- let currentUser=this.getUser(LABKEY.Security.currentUser.id,'currentUser');
- let currentSite=config.formConfig.currentSite;
- let formCreator=this.getUser(config.formConfig.crfEntry.UserId,'formCreator');
- let formCreatorId=formCreator.UserId;
- //let formSite=config.formConfig.crfEntry.Site;
- let fList=config.formConfig.operator+'s';
- let fRows=config.formConfig[fList];
- //let currentSiteId=-1;
- let operatorSites=new Array();
- for (let i=0;i<fRows.length;i++){
- if (fRows[i].User!=currentUser.UserId) continue;
- operatorSites.push(fRows[i].Site);
- }
-
- //depending on operator mode, we should decide what is right
- let operator=config.formConfig.operator;
- if (operator=='crfEditor'){
- //editor can only edit its own forms
- if (currentUser.UserId!=formCreatorId){
- if ("allowFormReassignment" in config.formConfig.settings){
- if (!operatorSites.includes(currentSite.siteNumber)){
- let msg='User '+currentUser.DisplayName;
- msg+=' has no permission for site '+currentSite.siteName;
- this.generateErrorMsg(msg);
- return;
- }
- let that=this;
- let action=new Object();
- action.name="formReassignement";
- action.cb=function(){that.doNothing();}
- config.formConfig.crfEntry['UserId']=currentUser.UserId;
- let status=config.formConfig.crfEntry['FormStatus'];
- this.updateFlag(status,action);
- }
- else{
- let msg='User '+currentUser.DisplayName;
- msg+=' has no permission on this form';
- this.generateErrorMsg(msg);
- return;
- }
- }
- }
- if (operator=='crfMonitor' || operator=='crfSponsor'){
- //monitor can look at forms based on his site
- //find monitor line
- this.print('operator Site: '+operatorSites.length);
- if (operatorSites.length==0){
- let msg='User '+currentUser.DisplayName;
- msg+=' is not a '+operator;
- this.generateErrorMsg(msg);
- return;
- }
- let selectedSite=-1;
- let siteCandidates="[";
- for (let i=0;i<operatorSites.length;i++){
- if (i>0) siteCandidates+=", ";
- siteCandidates+=operatorSites[i];
- if (operatorSites[i]!=currentSite.siteNumber) continue;
- selectedSite=currentSite.siteNumber;
- break;
- }
- siteCandidates+="]";
- if (selectedSite==-1){
- let msg='User '+currentUser.DisplayName;
- msg+=' is not a '+operator+' for site ';
- msg+=currentSite.siteName+'('+currentSite.siteNumber+')';
- msg+='/'+siteCandidates;
- this.generateErrorMsg(msg);
- return;
- }
- }
- this.print('User '+currentUser.DisplayName+'/'+
- config.formConfig.currentSite['siteName']+
- ' acting as '+config.formConfig.operator);
- let rows=config.formConfig.crfButtons.rows;
- config.formConfig.targetStatus=new Array();
- config.formConfig.targetRecipient=new Array();
- config.formConfig.actionSettings=new Array();
- for (let i=0; i<rows.length; i++){
- let action=rows[i].action;//String
- let tstatus=rows[i].targetFormStatus;
- let trecip=rows[i].targetRecipient;
- config.formConfig.targetStatus[action]=tstatus;
- config.formConfig.targetRecipient[action]=trecip;
- //allow for settings to be promoted with each action (and potentially parsed and acted upon)
- config.formConfig.actionSettings[action]=undefined;
- let aSet=rows[i].actionSettings;
- if (aSet){
- config.formConfig.actionSettings[action]=variableList.parseVariables(aSet);
- variableList.printVariables(this,config.formConfig.actionSettings[action]);
- }
- }
- let formStatus=config.formConfig.formStatus;
- //let functionArray=new Array();
- this.print("Generating buttons for formStatus \""+ formStatus+"\"");
- let allButtonRows=config.formConfig.crfButtons.rows;
- let buttonRows=new Array();
-
- //specifying role=X in actionSettings will limit button to that role
- for (let i=0;i<allButtonRows.length;i++){
- let action=allButtonRows[i]['action'];
- //filter on actionSettings
- let as=config.formConfig.actionSettings[action];
- if (variableList.hasVariable(as,'role')){
- this.print('Role['+config.formConfig.operator+'/'+as['role']+'] limited for action '+action);
- //mismatch skips addition of button to buttonRows
- if (config.formConfig.operator!=as['role']) continue;
- }
- buttonRows.push(allButtonRows[i]);
- }
- for (let i=0;i<buttonRows.length;i++){
- let bt=buttonRows[i];
- //if (typeof window[bt.action]==="function"){
- this.generateButton("submitDiv",bt.caption,bt.label,bt.action,null);
- //}
- //else{
- // this.print('No match for function :'+bt.action+
- // ' obj: '+window[bt.action]);
- //}
- }
- this.print('Here');
- //here we should get data. For now, just initialize objects that will hold data
- let that=this;
- let action=function(){that.afterDataLayout();};
- this.setDataLayout(action);//callback is afterDataLayout
- }
- crfVisit.afterDataLayout=
- function(){
- let that=this;
- let action=function(){that.afterData();};
- //let action=function(){that.doNothing();};
- this.setData(action);//callback is afterData
- }
- crfVisit.updateRegistration=
- function(){
- let fName="[updateRegistration]";
- let config=this.config;
- this.print(fName);
- let pM=this.getIdManager();
- let idFieldName=participantIdManager.getCrfEntryFieldName(pM,"STUDY");
- //have to reload query data
- let regQueryPars=variableList.parseVariables(config.formConfig.settings['registrationQuery']);
- let regQuery=regQueryPars['query'];
- let fQuery=this.getQuerySnapshot(regQuery);
- if (fQuery.rows.length==0) {
- this.print(fName+" registration is empty");
- return; //registration is empty
- }
- let regEntry=fQuery.rows[0];
- for (x in regEntry){
- this.print(fName+" ["+x+"] "+regEntry[x]);
- }
- let studyId=fQuery.rows[0][idFieldName];
- if (!studyId) {
- this.print(fName+" study id not set ("+idFieldName+'/'+studyId+")");
- return; //study id not set
- }
-
- //set
- participantIdManager.setParticipantIdToCrfEntry(pM,studyId,"STUDY");
- //this will only update crfEntry in memory, but not on LabKey,
- //we are counting on updateFlag to follow updateRegistration
- //update parentCRF as well, here we schedule update of data entry as well
- if ("parentCrfData" in config.formConfig){
- let parentCrfEntry=config.formConfig.parentCrfData.rows[0];
- parentCrfEntry[idFieldName]=studyId;
- let that=this;
- let action={name:"updateRegistration",cb:function(){that.doNothing();}};
- let cb=function(data){that.completeWithFlag(data,action);};
- this.modifyRows('update','lists','crfEntry',[parentCrfEntry],cb,this.getContainer('CRF'));
- }
- }
- crfVisit.afterData=
- function(){
- let fName='afterData';
- let config=this.config;
- //operatorBasedAccessMode
- let accessMode=config.formConfig.operator+'Mode';
- let rowsSetup=config.formConfig.formSetupRows;
- let idMode=config.formConfig.form['idMode'];
- //set default value if no value is in the list (read value is null)
- if (!idMode) idMode="STUDY:EDIT";
- this.print(fName+': idMode '+idMode);
- //add print to config so participantManager can use it
- let pM=this.getIdManager();
- //extend object
- let that=this;
- let action=new Object();
- action.name='updateCrfEntry';
- action.cb=function(){that.doNothing();};
- pM.updateCrfEntry=function(){that.updateFlag(config.formConfig.crfEntry['FormStatus'],action);};
- let idModeArray=idMode.split(':');
- pM.mode="STUDY";
- if (idModeArray.includes("LOCAL")) {
- pM.mode="LOCAL";
- //OK, but check if CRF or registration indicate that study id is already set
- participantIdManager.verifyCrfStudyId(pM);
- //study id should already be set by updateRegistration
- //verifyRegistration(pM);
- }
- if (idModeArray.includes("READONLY")){
- pM.readOnly="TRUE";
- }
-
- let pId=participantIdManager.getParticipantIdFromCrfEntry(pM);
- if (!pId){
- participantIdManager.setEditMode(pM);
- }
- else{
- let label=pId;
- if (pM.mode=="STUDY"){
- let loc=participantIdManager.getParticipantIdFromCrfEntry(pM,'LOCAL');
- label=pId+':'+loc;
- pM.readOnly="true";
- }
- participantIdManager.setLabelMode(pM,label);
- //in STUDY mode also change LOCAL ID from crfEntry
-
- }
- for (let i=0;i<rowsSetup.length;i++){
- let entry=rowsSetup[i];
- let queryName=config.formConfig.queryMap[entry['queryName']];
-
- this.print(fName+" ["+queryName+"]: showFlag: "+entry["showFlag"]);
- this.print(fName+" ["+queryName+"]: accessMode: "+entry[accessMode]);
- const nData=this.getQuerySnapshot(queryName).rows.length;
-
- this.print(fName+" ["+queryName+"]: nData: "+nData);
- //skip sections
- //also from fields
- if (entry[accessMode]=="NONE") continue;
- //skip readonly empty records
- //if (entry[accessMode]=="READ" && nData==0) continue;
-
- //let additionalData=new Object();
- //setAdditionalData(additionalData,entry);
- //section fits one dataset/list
-
- this.generateSection(entry);
- //generateSection(queryName,entry["title"],entry[accessMode],
- // additionalData);
- }
- }
- crfVisit.findSetupRow=
- function(queryName,formId){
- let config=this.config;
- let rowsSetup=config.formConfig.formSetupRows;
- for (let i=0;i<rowsSetup.length;i++){
- let e=rowsSetup[i];
- let queryName1=config.formConfig.queryMap[e['queryName']];
- if (e.formName!=formId) continue;
- if (queryName1!=queryName) continue;
- return e;
- }
- return null;
- }
- crfVisit.populateSection=
- function(queryName){
- let fName='[populateSection/'+queryName+']';
- let config=this.config;
- this.print(fName);
- //old setting
- let formId=config.formId;
- //new setting
- formId=config.formConfig.formId;
- let entry=this.findSetupRow(queryName,formId);
- //ignore names without associated entry in formSetup
- if (entry==undefined){
- this.print(fName+': no matching FormSetup entry found');
- return;
- }
- //populate comes after generate, we should be pretty safe in taking
- //already generated additionalData
-
- if (!(queryName in config.formConfig.additionalData)){
- this.print(fName+': no additionalData generated for '+queryName);
- return;
- }
-
- let additionalData=config.formConfig.additionalData[queryName];
- this.print(fName+': using additionalData '+additionalData);
- if ("isReview" in additionalData){
- let action=function(){crfReviewSection.CB();};
- crfReviewSection.generateSection(queryName,queryName,action);
- return;
- }
- let accessMode=config.formConfig.operator+'Mode';
- let aM=entry[accessMode];
- this.print(fName+': accessMode '+aM);
- if (aM!='GENERATE'){
- let writeMode=entry[accessMode]=='EDIT';
- this.print(fName+': mode='+writeMode);
- this.populateTable(queryName,writeMode);
- return;
- }
- //deal with generate
- //
- //already available -> shift to READ mode
- let divTable=queryName+'Table';
- let divObj=this.getElement(divTable);
- let divRev=this.getElement(queryName+'Review');
- let divRLi=this.getElement(queryName+'ReviewList');
- let divGBu=this.getElement(queryName+'GenerateButton');
- this.print('div GBU: '+divGBu);
- divObj.style.display="block";
- divRev.style.display="block";
- divRLi.style.display="block";
- if (divGBu!=undefined) divGBu.style.display="none";
- let nData=this.getQuerySnapshot(queryName).rows.length;
- this.print('['+queryName+']: nrows '+nData);
- if (nData>0){
- this.populateTable(queryName,0);
- return;
- }
- //hide table
- divObj.style.display="none";
- divRev.style.display="none";
- divRLi.style.display="none";
- if (divGBu!=undefined) divGBu.style.display="block";
- //add buttons?
- //is button already generated?
-
- //populateTable(entry);
-
- }
- //******* generateQuery infrastructure *********************
- crfVisit.onGenerateQuery=
- function(queryName){
- let fName='[onGenerateQuery]';
- this.print(fName+' '+queryName);
- //
- let config=this.config;
- let cfgRows=config.formConfig.generateConfigData.rows;
- // //queryName to queryId?
- let queryId=config.formConfig.fields[queryName].queryId;
- let cfgRow=undefined;
- for (let i=0;i<cfgRows.length;i++){
- if (cfgRows[i].queryId!=queryId) continue;
- cfgRow=cfgRows[i];
- break;
- }
- if (cfgRow==undefined){
- this.print('generateConfig for queryName['+queryId+']='+queryName+' not found');
- return;
- }
- //add config to the list
- if (!("generateConfig" in config.formConfig)){
- config.formConfig.generateConfig=new Object();
- }
- config.formConfig.generateConfig[queryName]=cfgRow;
- if (!("generateForm" in config.formConfig)){
- config.formConfig.generateForm=new Object();
- }
-
- //
- let formRows=config.formConfig.formRows;
- let formId=cfgRow.formId;
- for (let i=0;i<formRows.length;i++){
- if (formRows[i].Key==formId) {
- config.formConfig.generateForm[queryName]=formRows[i];
- break;
- }
- }
- //this.print('XcfgRow '+config.formConfig.generateForm[queryName]);
- //
- // //check if all required datasets were at least saved
- this.checkGenerationFields(queryName);
- }
- crfVisit.checkGenerationFields=
- function(queryName){
- let fName='[checkGenerationFields]';
- let config=this.config;
- let genForm=config.formConfig.generateForm[queryName];
- let genCfg=config.formConfig.generateConfig[queryName];
- let mailRecipient=genCfg.emailRecipient;
-
- //list of queries that are part of Registration form
- this.print(fName);
- this.print(fName+' setRecipient: '+mailRecipient);
- let formId=genForm.Key;
- this.print(fName+" Checking form w/id "+formId);
- let selectGenerationRows=this.selectFormSetupRows(formId);
- //registration rows
- for (let i=0;i<selectGenerationRows.length;i++){
- let row=selectGenerationRows[i];
- let queryId=row.queryName;
- let fQueryName=config.formConfig.queryMap[queryId];
- if (fQueryName==queryName) continue;
- let fQuery=this.getQuerySnapshot(fQueryName);
- this.print('Checking '+fQueryName+' nrows: '+fQuery.rows.length);
- if (fQuery.rows.length==0){
- this.generateError(queryName,fQueryName);
- return;
- }
- }
- this.generateMessage(queryName,'Vailidation OK');
- this.print('callback: set recipient: '+mailRecipient);
- let that=this;
- let cb=function(){that.prepareForm(queryName,formId,mailRecipient);};
- this.generateListEntry(formId,queryName,cb);
- }
- crfVisit.prepareForm=
- function(queryName,formId,mailRecipient){
- let fName="[prepareForm]";
- this.print(fName+' recipient '+mailRecipient);
- //look for existing registration entry
- let that=this;
- let action=function(data){that.generateForm(data,queryName,mailRecipient);};
- let formFilter=LABKEY.Filter.create('Form',formId);
- let parentCrfFilter=LABKEY.Filter.create('parentCrf',this.getCRFref());
- let filters=[formFilter,parentCrfFilter];
- this.selectRows('lists','crfEntry',filters,action,this.getContainer('data'));
- }
- crfVisit.generateError=
- function(queryName,fQueryName){
- let elName=queryName+'GenerateButton'+'_reportField';
- let el=this.getElement(elName);
- el.innerText='Error: '+fQueryName+' was not set';
- el.style.color='red';
- }
- crfVisit.generateMessage=
- function(queryName,msg){
- let elName=queryName+'GenerateButton'+'_reportField';
- let el=this.getElement(elName);
- el.innerText=msg;
- el.style.color='green';
- }
- crfVisit.generateForm=
- function(data,queryName,mailRecipient){
- let fName='[generateForm]';
- this.print(fName+' recipient: '+mailRecipient);
- //
- const nData=data.rows.length;
- this.print(fName+' Registration: '+nData+' rows');
- let config=this.config;
- let formRow=config.formConfig.generateForm[queryName];
- let formCfg=config.formConfig.generateConfig[queryName];
- //we have to generate masterQuery with parentCrf and crfRef
- //and crfEntry with new entryId and parentCrf equal to crfRef
- if (nData>0) {
- this.generateMessage(queryName,'Registration already generated.');
- return;
- }
- let formId=formRow.Key;
- let formName=formRow.formName;
- let crfBase=config.formConfig.crfEntry;
- let crfEntry=new Object();
- //add new reference
- crfEntry.entryId=Date.now();
- crfEntry.parentCrf=this.getCRFref();
- crfEntry["Date"]=new Date();
- crfEntry["View"]="[VIEW]";
- crfEntry.formStatus=1;//In progress
- //checks for both field presence (if not in query, undefined) and field value (if not set, null)
- this.print(fName+' setup status: '+formCfg.formStatus);
- if (formCfg.formStatus){
- crfEntry.formStatus=formCfg.formStatus;
- }
- //get local Id
- let pM=this.getIdManager();
-
- crfEntry[participantIdManager.getCrfEntryFieldName(pM)]=participantIdManager.getParticipantIdFromCrfEntry(pM);
- // //set other variables
- //requires studyData as part of formConfig
- // let studyData=config.formConfig.studyData;
- this.print('Adding study: '+crfBase.EudraCTNumber);
- crfEntry.EudraCTNumber=crfBase.EudraCTNumber;
- crfEntry.StudyCoordinator=crfBase.StudyCoordinator;
- crfEntry.StudySponsor=crfBase.StudySponsor;
- crfEntry.RegulatoryNumber=crfBase.RegulatoryNumber;
- //
- // //find sponsor for site
- let site=crfBase.Site;
- let crfSponsors=config.formConfig.crfSponsors;
- let users=config.formConfig.userRows;
- for (let i=0;i<crfSponsors.length;i++){
- //this.print('Checking for site '+crfSponsors[i].Site);
- if (crfSponsors[i].Site!=site) continue;
- config.formConfig.sponsorId=crfSponsors[i].User;
- //this.print('Setting id '+config.formConfig.sponsorId);
- //finds first
- break;
- }
- for (let j=0;j<users.length;j++){
- if (config.formConfig.sponsorId!=users[j].UserId) continue;
- config.formConfig.sponsor=users[j];
- //finds first (should be unique)
- break;
- }
- this.print('Selecting '+config.formConfig.sponsor.DisplayName+' as sponsor');
- //different user than the original form...
- //should be set to the study sponsor
- crfEntry.UserId=config.formConfig.sponsor.UserId;
- crfEntry.Site=site;
- // //set formId to one found through registration search
- crfEntry.Form=formId;
- ////
- let crfStatus=this.createCrfStatus(crfEntry);
- crfStatus.operator=config.formConfig.operator;
- crfStatus.action='generateForm';
- let that=this;
- let action=function(){that.doNothing();};
- let cb=function(data){that.sendEmail(data,mailRecipient,action,formName+' generated');}
- let containerPath=this.getContainer('data');
- let pass=function(data){that.insertRows('lists','crfStatus',[crfStatus],cb,containerPath);};
- this.insertRows('lists','crfEntry',[crfEntry],pass,this.getContainer('data'));
- }
- crfVisit.generateListEntry=
- function(formId,queryName,cb){
- //check if registration was already generated
- let config=this.config;
- let formRows=config.formConfig.formRows;
- let qForm=undefined;
- for (let i=0;i<formRows.length;i++){
- if (formRows[i].Key!=formId) continue;
- qForm=formRows[i];
- }
- let nData=this.getQuerySnapshot(queryName).rows.length;
- if (nData>0) return;
- //create new list entry
- let pM=this.getIdManager();
-
- let e2=new Object();
- e2.crfRef=this.getCRFref();
- e2.registrationStatus=0;
- e2.submissionDate=new Date();
- e2[participantIdManager.getCrfEntryFieldName(pM)]=participantIdManager.getParticipantIdFromCrfEntry(pM);
- this.print('set values');
- this.insertRows('lists',queryName,[e2],cb,this.getContainer('data'));
- }
-
- // ******************** end form generator (Registration) ********************
- //jump to populate table/generate review, etc defined at the begining of the file
- //entry point from generateMasterForm
- crfVisit.setFormConfig=
- function(){
- let fName="[setFormConfig]";
- let config=this.config;
- //add object to store form related data
- config.formConfig=new Object();
- config.formConfig.softwareVersion='T.15.68';
- this.print(fName+" generateMasterForm");
-
- //set containers for data and configuration
- //TODO: set this from a query
- //
-
- this.setContainer('data',LABKEY.ActionURL.getContainer());
- this.setContainer('config',LABKEY.ActionURL.getContainer());
- this.setContainer('CRF',LABKEY.ActionURL.getContainer());
- //this is local data
- let that=this;
- let action=function(data){that.afterSettings(data);};
- this.selectRows('lists','crfSettings',[],action,this.getContainer('CRF'));
- //store form related data to this object
- }
- crfVisit.afterSettings=
- function(data){
- let fName='[afterSettings]';
- let config=this.config;
-
- config.formConfig.settings=variableList.convertToDictionary(data.rows);
- let st=config.formConfig.settings;
- this.print('afterSettings');
- for (let k in st){
- this.print(fName+'\t'+k+'='+st[k]);
- }
- //if ('dataContainer' in st){
- // setContainer('data',st['dataContainer']);
- //}
- let vname='configContainer';
- if (vname in st){
- this.setContainer('config',st[vname]);
- }
- this.print('Config: '+this.getContainer('config'));
- this.print('Data: '+this.getContainer('data'));
- //use first-> we must first establish link to the rigth crf entry
- let filters=[LABKEY.Filter.create('entryId',this.getCRFrefFirst())];
- let that=this;
- let action=function(data){that.afterCRFEntry(data);};
- this.selectRows('lists','crfEntry',filters,action,this.getContainer('data'));
- }
- crfVisit.afterCRFEntry=
- function(data){
- let config=this.config;
- let fName='[afterCRFEntry]';
- config.formConfig.crfEntry=data.rows[0];
- this.print("Setting crfEntry (x) to "+config.formConfig.crfEntry["entryId"]);
- //for empty records or those with parentCrf not set, parentCrf comes up as null
- //nevertheless, with two equal signs, check against undefined also works
- this.print('parentCrf set to '+config.formConfig.crfEntry.parentCrf);
-
- this.collectData();
- }
- crfVisit.collectData=
- function(){
- let config=this.config;
- let targetObject=config.formConfig;
- let queryArray=new Array();
- //k
- //site
- queryArray.push(runQuery.makeQuery(targetObject,'config','site','siteData',[]));
- //users
- queryArray.push(runQuery.makeQuery(targetObject,'CRF','users','userData',[]));
- queryArray[queryArray.length-1].schemaName='core';
- //crfEditors
- queryArray.push(runQuery.makeQuery(targetObject,'config','crfEditors','crfEditorsData',[]));
- //crfMonitors
- queryArray.push(runQuery.makeQuery(targetObject,'config','crfMonitors','crfMonitorsData',[]));
- //crfSponsors
- queryArray.push(runQuery.makeQuery(targetObject,'config','crfSponsors','crfSponsorsData',[]));
- //crfManagers
- queryArray.push(runQuery.makeQuery(targetObject,'config','crfManagers','crfManagersData',[]));
- //study static data
- queryArray.push(
- runQuery.makeQuery(targetObject,'data','crfStaticVariables','crfStaticVariables',[]));
- queryArray.push(runQuery.makeQuery(targetObject,'data','specialFields','specialFieldsQuery',[]));
- //study
- queryArray.push(runQuery.makeQuery(targetObject,'data','Study','studyDataAll1',[]));
- let e=queryArray[queryArray.length-1];
- //overload schema name
- e.schemaName='study';
- //make sure variables not part of default view are loaded
- //here we should already have read crfStaticVariables table
- e.columns="SubjectColumnName,EudraCTNumber,StudySponsor";
- e.columns+=",StudyCoordinator,RegulatoryNumber";
-
- //formStatus
- let varLabel='sourceFormStatus';
- let formStatus=config.formConfig.crfEntry['FormStatus'];
- let formFilter=LABKEY.Filter.create('Key',formStatus);
- queryArray.push(
- runQuery.makeQuery(targetObject,'config','FormStatus','formStatusData',[formFilter]));
- //crfButtons
- let statusFilter=LABKEY.Filter.create(varLabel,formStatus);
- queryArray.push(
- runQuery.makeQuery(targetObject,'config','crfButtons','crfButtons',[statusFilter]));
- //Forms
- queryArray.push(runQuery.makeQuery(targetObject,'config','Forms','formData',[]));
- //FormSetup
- queryArray.push(runQuery.makeQuery(targetObject,'config','FormSetup','formSetup',[]));
- //generateConfig
- queryArray.push(
- runQuery.makeQuery(targetObject,'config','generateConfig','generateConfigData',[]));
-
- //inputLists
- queryArray.push(
- runQuery.makeQuery(targetObject,'config','inputLists','inputLists',[]));
- //parentCrf
- let parentCrf=config.formConfig.crfEntry['parentCrf'];
- if (parentCrf!=undefined){
- let crfFilter=LABKEY.Filter.create('entryId',parentCrf);
- queryArray.push(runQuery.makeQuery(targetObject,'data','crfEntry','parentCrfData',[crfFilter]));
- }
- this.print('running getDataFromQueries');
- let that=this;
- //let action=function(data){that.doNothing();};
- let action=function(){that.addStudyData();};
- runQuery.getDataFromQueries(this,queryArray,action);
- }
- crfVisit.addStudyData=
- function(){
- let fName='addStudyData';
- let config=this.config;
- //convert specialFields to array
- let q=config.formConfig["specialFieldsQuery"].rows;
- config.formConfig.specialFields=variableList.convertToAssociatedArray(q,"fieldUID");
- this.print(fName);
- let queryArray=new Array();
-
- let targetObject=config.formConfig;
- //study
- queryArray.push(runQuery.makeQuery(targetObject,'data','Study','studyDataAll',[]));
- //queryArray.push(runQuery.makeQuery('data','Study','studyDataAll',[]));
- let e=queryArray[queryArray.length-1];
- //overload schema name
- e.schemaName='study';
- //make sure variables not part of default view are loaded
- //here we should already have read crfStaticVariables table
- let staticVarRows=config.formConfig['crfStaticVariables'].rows;
- let columnModel=""
- for (let i=0;i<staticVarRows.length;i++){
- if (i>0) columnModel+=',';
- columnModel+=staticVarRows[i]['staticVariable'];
- }
- e.columns=columnModel;
- //also collect ids already in study
- //registrationQuery should be a dataset
- //since monitors can review late, it might be profitable to use lists
- //rather than study
- let regQueryPars=variableList.parseVariables(config.formConfig.settings['registrationQuery']);
- let regQuery=regQueryPars['query'];
- let regSchema='study';
- if ('schema' in regQueryPars){
- regSchema=regQueryPars['schema'];
- }
- queryArray.push(runQuery.makeQuery(targetObject,'data',regQuery,'registrationData',[]));
- queryArray[queryArray.length-1].schemaName=regSchema;
-
- let that=this;
- let action=function(){that.fcontinue();};
- runQuery.getDataFromQueries(this,queryArray,action);
- }
- crfVisit.fcontinue=
- function(){
- //debug
- let fName='[fcontinue]';
- let config=this.config;
- let varRows=config.formConfig['crfStaticVariables'].rows;
- let studyVars=config.formConfig['studyDataAll'].rows[0];
- for (let i=0;i<varRows.length;i++){
- let vName=varRows[i].staticVariable;
- this.print(fName+' '+vName+': '+studyVars[vName]);
- }
- //parse site
- config.formConfig.siteRows=config.formConfig.siteData.rows;
- let sRows=config.formConfig.siteRows;
- for (let i=0;i<sRows.length;i++){
- let siteId=sRows[i].siteNumber;
- this.print('site '+siteId);
- if (siteId==config.formConfig.crfEntry.Site){
- config.formConfig.currentSite=sRows[i];
- break;
- }
- }
- //config.formConfig.site=data.rows[0];
- this.print("Setting site name to "+config.formConfig.currentSite.siteName);
- //study
- config.formConfig.studyData=config.formConfig.studyDataAll.rows[0];
- this.print("XSetting participantField to "+
- config.formConfig.studyData["SubjectColumnName"]);
-
- config.formConfig.crfEditors=config.formConfig.crfEditorsData.rows;
- config.formConfig.crfMonitors=config.formConfig.crfMonitorsData.rows;
- config.formConfig.crfSponsors=config.formConfig.crfSponsorsData.rows;
- config.formConfig.crfManagers=config.formConfig.crfManagersData.rows;
- config.formConfig.userRows=config.formConfig.userData.rows;
- let uRows=config.formConfig.userRows;
- for (let i=0;i<uRows.length;i++){
- let userId=uRows[i].UserId;
- if (userId==config.formConfig.crfEntry.UserId){
- config.formConfig.user=uRows[i];
- break;
- }
- }
- //config.formConfig.user=data.rows[0];
- this.print("Setting user to "+config.formConfig.user["DisplayName"]);
- let fsRows=config.formConfig.formStatusData.rows;
- config.formConfig.formStatus=fsRows[0].formStatus;
- config.formConfig.operator=config.role;
- //config.formConfig.operator=fsRows[0].operator;
- this.print('Setting operator to: '+config.formConfig.operator);
-
- config.formConfig.formRows=config.formConfig.formData.rows;
- //point formId to point to form set in crfEntry
- config.formConfig.formId=config.formConfig.crfEntry['Form'];
- //old setting, set from URL in visit.html
- let formId=config.formId;
- //new setting, set from crfEntry
- formId=config.formConfig.formId;
- let formRows=config.formConfig.formRows;
- //filter out the current form
- for (let i=0;i<formRows.length;i++){
- if (formRows[i].Key==formId){
- config.formConfig.form=formRows[i];
- break;
- }
- }
-
- config.formConfig.formSetupRows=this.selectFormSetupRows(formId);
- this.print("Number of datasets for form ["+formId+"]: "+
- config.formConfig.formSetupRows.length);
- let fields=config.formConfig.formSetup.metaData.fields;
- //get the lookup for queryName column
- let formQueryName='queryName';
- let field="NONE";
- for (f in fields){
- if (fields[f]['name']!=formQueryName) continue;
- field=fields[f];
- break;
- }
- let lookup=field.lookup;
- this.print("Getting dataset names from "+lookup.queryName);
- //inputLists should be in configuration container
- let that=this;
- let action=function(data){that.afterFormDatasets(data);};
- //let action=function(data){that.doNothing();};
- this.selectRows(lookup.schemaName,lookup.queryName,[],action,this.getContainer('config'));
- }
- crfVisit.afterFormDatasets=
- function(data){
- let fName='[afterFormDatasets]';
- this.print(fName+' nrows '+data.rows.length);
- let config=this.config;
- config.formConfig.formDatasets=data;//inputLists
- config.formConfig.fields=new Object();
- config.formConfig.queryMap=new Object();
- config.formConfig.additionalData=new Object();
- let rows=config.formConfig.formSetupRows;
- //should skip report only rows
- for (let i=0;i<rows.length;i++){
- let entry=rows[i];
- let reviewField=(entry['showFlag']=='REVIEW');
- //is the operator set yet?
- let accessMode=config.formConfig.operator+'Mode';
- let skipField=(entry[accessMode]=="NONE");
- let queryId=entry['queryName'];
- let lookupRows=config.formConfig.formDatasets.rows;
- this.print('QueryID['+i+']='+queryId);
- let dentry;
- for (let j=0;j<lookupRows.length;j++){
-
- if (queryId!=lookupRows[j]['Key']) continue;
- dentry=lookupRows[j];
- break;
- }
- let qName=dentry['queryName'];
- //update list of dataset formConfig is observing (fields/queryMap)
- while (1){
- //review contains no data
- if (reviewField) break;
- if (skipField) break;
- //already in fields
- if (qName in config.formConfig.fields) break;
- config.formConfig.fields[qName]=new Object();
- break;
- }
- while(1){
- //already done
- if (queryId in config.formConfig.queryMap) break;
- config.formConfig.queryMap[queryId]=qName;
- break;
- }
- if (reviewField) continue;
- if (skipField) continue;
- //only do this for real lists
- let field=config.formConfig.fields[qName];
- field.title=entry['title'];
- field.queryId=queryId;
- }
- this.print("List of datasets in form : ");
- for (f in config.formConfig.fields){
- let field=config.formConfig.fields[f];
- this.print("\t"+f+" ID: "+field.queryId+' title '+field.title);
- }
- this.afterConfig();
- }
- //>>>>>>>>>>>>>>>>>new>>>>>>>>>>>>
- crfVisit.setDataLayout=
- function(cb){
- let fName='[setDataLayout]';
- let config=this.config;
- this.print(fName);
- let rowsSetup=config.formConfig.formSetupRows;
- let queryArray=new Array();
- let dS=this.getLayoutObject();//reference only
- let qList=this.getQueryList();
- let qMap=config.formConfig.queryMap;
- //config.formConfig.lookup=new Object();
- for (let i=0;i<rowsSetup.length;i++){
- let entry=rowsSetup[i];
- //skip review rows
- if (entry['showFlag']=='REVIEW')
- continue;
- let queryId=entry['queryName'];
- let q=qMap[queryId];
- queryArray.push(runQuery.makeQuery(dS,'data',q,q,[]));
- qList[q]=0;
- this.print(fName+' adding '+q);
- if (entry['showQuery']!="NONE"){
- let sq=entry['showQuery'];
- queryArray.push(runQuery.makeQuery(dS,'data',sq,sq,[]));
- qList[sq]=0;
- this.print(fName+' adding '+sq);
-
- }
- }
- //always add reviews
- let q='reviewComments';
- queryArray.push(runQuery.makeQuery(dS,'data',q,q,[]));
- qList[q]=0;
- let that=this;
- let action=function(){that.processLayout(cb);};
- runQuery.getDataFromQueries(this,queryArray,action);
- }
- //this happens after the for loop, so all dataQueries objects are set
- crfVisit.processLayout=
- function(cb){
- let fName='[processLayout]';
- let qList=this.getQueryList();
- //for layouts
- let queryArray=new Array();
- let targetObject=this.getLookupObject();
- let lookupSet=new Object();
- for (let q in qList){
- let qobject=this.getQueryLayout(q);
- this.print(fName+" inspecting layout for "+q+" "+qobject);
- qobject.fields=qobject.metaData.fields;
- qobject.title=this.findTitle(q);
- //check for lookups
- for (let f in qobject.fields){
- //anything else is simple but lookup
- let field=qobject.fields[f];
- if (!("lookup" in field)) continue;
- let lookup=field.lookup;
- let qObject=this.getLookup(lookup.queryName);
- if (qObject) continue;
- //add to list
- let qName=lookup.queryName;
- let qCode=qName+':'+lookup.keyColumn+':'+lookup.displayColumn;
- let e=runQuery.makeQuery(targetObject,'data',qName,qCode,[]);
- //adjust minor settings
- if (lookup.containerPath) e.containerPath=lookup.containerPath;
- e.schemaName=lookup.schemaName;
- e.columns=lookup.keyColumn+','+lookup.displayColumn;
- lookupSet[qCode]=e;
- this.print(fName+' inserting '+qCode);
- }
- }
- for (let x in lookupSet){
- queryArray.push(lookupSet[x]);
- this.print(fName+' adding '+x);
- for (let v in lookupSet[x]){
- this.print(fName+' value ['+v+'] '+lookupSet[x][v]);
- }
- }
- //this.print(fName+' print '+targetObject.print);
- let that=this;
- let action=function(){that.processLookup(cb);};
- this.print(fName+' getDataFromQueries');
- runQuery.getDataFromQueries(this,queryArray,action);
- this.print(fName+' getDataFromQueries done');
- }
- crfVisit.processLookup=
- function(cb){
- let fName="[processLookup]";
- let obj=this.getLookupObject();
- for (let q in obj){
- this.print(fName+" "+q);
- let a=q.split(':');
- if (a.length<3) continue;
- let lookupName=a[0];
- let key=a[1];
- let val=a[2];
- obj[lookupName]=new Object();
- this.print(fName+' adding ['+lookupName+'] '+key+'/'+val);
- let lObject=obj[lookupName];
- lObject.LUT=new Array();//key to value
- lObject.ValToKey=new Array();//value to key
- lObject.keyColumn=key
- lObject.displayColumn=val;
-
- let qRows=obj[q].rows;
- for (let i=0;i<qRows.length;i++){
- let r=qRows[i];
- this.print(fName+' LUT ['+r[key]+'] '+r[val]);
- lObject.LUT[r[key]]=r[val];
- lObject.ValToKey[r[val]]=r[key];
- }
- }
- cb();
- }
- crfVisit.setData=
- function(cb){
- fName='[setData]';
- let crfMatch=this.getCRFref();
- let config=this.config;
- let parentCrf=config.formConfig.crfEntry['parentCrf'];
- if (parentCrf!=undefined) crfMatch=parentCrf;
- this.print(fName+' form crf ['+this.getCRFref()+'] matching for crfRef='+crfMatch);
- let queryArray=new Array();
- let targetObject=this.getSnapshotObject();
- //collect data and execute callback cb for queries in cb.queryList
- let qList=this.getQueryList();
- for (q in qList){
- let filters=[LABKEY.Filter.create("crfRef",crfMatch)];
- queryArray.push(runQuery.makeQuery(targetObject,'data',q,q,filters));
- }
- runQuery.getDataFromQueries(this,queryArray,cb);
- }
- crfVisit.uploadFile=
- function(inputElement,context){
- //context should have ID and dirName attributes;
- //path will be dirName/ID/fieldName_ID.suf
- //where suf is identical to localPath content picked from
- //inputElement
- this.print('uploadFile: '+inputElement.value+'/');
- if (inputElement.type=="text") return;
- this.print('uploadFile: '+inputElement.files+'/');
- this.print('uploadFile: '+inputElement.files.length+'/');
- if (inputElement.files.length>0){
- let file=inputElement.files[0];
- this.print('uploadFile: '+inputElement.value+'/'+file.size);
- webdav.uploadFile(file,context);
- }
- }
- crfVisit.printForm=
- function(){
- crfPrint.printForm();
- }
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