alzheimers_nn/train_cnn.py

#MACHINE LEARNING
import torch
import torch.nn as nn
import torch.optim as optim

#GENERAL USE
import random as rand

#SYSTEM
import tomli as toml
import os

#DATA PROCESSING
from sklearn.model_selection import train_test_split

#CUSTOM MODULES
import utils.models.cnn as cnn
from utils.data.datasets import prepare_datasets, initalize_dataloaders 
import utils.training as train

#CONFIGURATION
if os.getenv('ADL_CONFIG_PATH') is None:
    with open ('config.toml', 'rb') as f:
        config = toml.load(f)
else:
    with open(os.getenv('ADL_CONFIG_PATH'), 'rb') as f:
        config = toml.load(f)
        
for i in range(config['training']['runs']):           
    #Set up the model
    model = cnn.CNN(config['model']['image_channels'], config['model']['clin_data_channels'], config['hyperparameters']['droprate']).float()
    criterion = nn.BCELoss()
    optimizer = optim.Adam(model.parameters(), lr = config['hyperparameters']['learning_rate'])

    #Generate seed for each run
    seed = rand.randint(0, 1000)

    #Prepare data
    train_dataset, val_dataset, test_dataset = prepare_datasets(config['paths']['mri_data'], config['paths']['xls_data'], config['dataset']['validation_split'], seed)
    train_dataloader, val_dataloader, test_dataloader = initalize_dataloaders(train_dataset, val_dataset, test_dataset, config['hyperparameters']['batch_size'])
    
    #Train the model
    history = train.train_model(model, train_dataloader, val_dataloader, criterion, optimizer, config)
    
    #Save model
    if not os.path.exists(config['paths']['model_output'] + "/" + str(config['model']['name'])):
        os.makedirs(config['paths']['model_output'] + "/" + str(config['model']['name']))
    
    torch.save(model, config['paths']['model_output'] + "/" + str(config['model']['name']) + "/" + str(i) + "_" + "s-" + str(seed) + ".pt")