Clean up files and continue work on the sensitivity analysis

.venv/bin/Activate.ps1

@@ -1,247 +0,0 @@
-<#
-.Synopsis
-Activate a Python virtual environment for the current PowerShell session.
-
-.Description
-Pushes the python executable for a virtual environment to the front of the
-$Env:PATH environment variable and sets the prompt to signify that you are
-in a Python virtual environment. Makes use of the command line switches as
-well as the `pyvenv.cfg` file values present in the virtual environment.
-
-.Parameter VenvDir
-Path to the directory that contains the virtual environment to activate. The
-default value for this is the parent of the directory that the Activate.ps1
-script is located within.
-
-.Parameter Prompt
-The prompt prefix to display when this virtual environment is activated. By
-default, this prompt is the name of the virtual environment folder (VenvDir)
-surrounded by parentheses and followed by a single space (ie. '(.venv) ').
-
-.Example
-Activate.ps1
-Activates the Python virtual environment that contains the Activate.ps1 script.
-
-.Example
-Activate.ps1 -Verbose
-Activates the Python virtual environment that contains the Activate.ps1 script,
-and shows extra information about the activation as it executes.
-
-.Example
-Activate.ps1 -VenvDir C:\Users\MyUser\Common\.venv
-Activates the Python virtual environment located in the specified location.
-
-.Example
-Activate.ps1 -Prompt "MyPython"
-Activates the Python virtual environment that contains the Activate.ps1 script,
-and prefixes the current prompt with the specified string (surrounded in
-parentheses) while the virtual environment is active.
-
-.Notes
-On Windows, it may be required to enable this Activate.ps1 script by setting the
-execution policy for the user. You can do this by issuing the following PowerShell
-command:
-
-PS C:\> Set-ExecutionPolicy -ExecutionPolicy RemoteSigned -Scope CurrentUser
-
-For more information on Execution Policies: 
-https://go.microsoft.com/fwlink/?LinkID=135170
-
-#>
-Param(
-    [Parameter(Mandatory = $false)]
-    [String]
-    $VenvDir,
-    [Parameter(Mandatory = $false)]
-    [String]
-    $Prompt
-)
-
-<# Function declarations --------------------------------------------------- #>
-
-<#
-.Synopsis
-Remove all shell session elements added by the Activate script, including the
-addition of the virtual environment's Python executable from the beginning of
-the PATH variable.
-
-.Parameter NonDestructive
-If present, do not remove this function from the global namespace for the
-session.
-
-#>
-function global:deactivate ([switch]$NonDestructive) {
-    # Revert to original values
-
-    # The prior prompt:
-    if (Test-Path -Path Function:_OLD_VIRTUAL_PROMPT) {
-        Copy-Item -Path Function:_OLD_VIRTUAL_PROMPT -Destination Function:prompt
-        Remove-Item -Path Function:_OLD_VIRTUAL_PROMPT
-    }
-
-    # The prior PYTHONHOME:
-    if (Test-Path -Path Env:_OLD_VIRTUAL_PYTHONHOME) {
-        Copy-Item -Path Env:_OLD_VIRTUAL_PYTHONHOME -Destination Env:PYTHONHOME
-        Remove-Item -Path Env:_OLD_VIRTUAL_PYTHONHOME
-    }
-
-    # The prior PATH:
-    if (Test-Path -Path Env:_OLD_VIRTUAL_PATH) {
-        Copy-Item -Path Env:_OLD_VIRTUAL_PATH -Destination Env:PATH
-        Remove-Item -Path Env:_OLD_VIRTUAL_PATH
-    }
-
-    # Just remove the VIRTUAL_ENV altogether:
-    if (Test-Path -Path Env:VIRTUAL_ENV) {
-        Remove-Item -Path env:VIRTUAL_ENV
-    }
-
-    # Just remove VIRTUAL_ENV_PROMPT altogether.
-    if (Test-Path -Path Env:VIRTUAL_ENV_PROMPT) {
-        Remove-Item -Path env:VIRTUAL_ENV_PROMPT
-    }
-
-    # Just remove the _PYTHON_VENV_PROMPT_PREFIX altogether:
-    if (Get-Variable -Name "_PYTHON_VENV_PROMPT_PREFIX" -ErrorAction SilentlyContinue) {
-        Remove-Variable -Name _PYTHON_VENV_PROMPT_PREFIX -Scope Global -Force
-    }
-
-    # Leave deactivate function in the global namespace if requested:
-    if (-not $NonDestructive) {
-        Remove-Item -Path function:deactivate
-    }
-}
-
-<#
-.Description
-Get-PyVenvConfig parses the values from the pyvenv.cfg file located in the
-given folder, and returns them in a map.
-
-For each line in the pyvenv.cfg file, if that line can be parsed into exactly
-two strings separated by `=` (with any amount of whitespace surrounding the =)
-then it is considered a `key = value` line. The left hand string is the key,
-the right hand is the value.
-
-If the value starts with a `'` or a `"` then the first and last character is
-stripped from the value before being captured.
-
-.Parameter ConfigDir
-Path to the directory that contains the `pyvenv.cfg` file.
-#>
-function Get-PyVenvConfig(
-    [String]
-    $ConfigDir
-) {
-    Write-Verbose "Given ConfigDir=$ConfigDir, obtain values in pyvenv.cfg"
-
-    # Ensure the file exists, and issue a warning if it doesn't (but still allow the function to continue).
-    $pyvenvConfigPath = Join-Path -Resolve -Path $ConfigDir -ChildPath 'pyvenv.cfg' -ErrorAction Continue
-
-    # An empty map will be returned if no config file is found.
-    $pyvenvConfig = @{ }
-
-    if ($pyvenvConfigPath) {
-
-        Write-Verbose "File exists, parse `key = value` lines"
-        $pyvenvConfigContent = Get-Content -Path $pyvenvConfigPath
-
-        $pyvenvConfigContent | ForEach-Object {
-            $keyval = $PSItem -split "\s*=\s*", 2
-            if ($keyval[0] -and $keyval[1]) {
-                $val = $keyval[1]
-
-                # Remove extraneous quotations around a string value.
-                if ("'""".Contains($val.Substring(0, 1))) {
-                    $val = $val.Substring(1, $val.Length - 2)
-                }
-
-                $pyvenvConfig[$keyval[0]] = $val
-                Write-Verbose "Adding Key: '$($keyval[0])'='$val'"
-            }
-        }
-    }
-    return $pyvenvConfig
-}
-
-
-<# Begin Activate script --------------------------------------------------- #>
-
-# Determine the containing directory of this script
-$VenvExecPath = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$VenvExecDir = Get-Item -Path $VenvExecPath
-
-Write-Verbose "Activation script is located in path: '$VenvExecPath'"
-Write-Verbose "VenvExecDir Fullname: '$($VenvExecDir.FullName)"
-Write-Verbose "VenvExecDir Name: '$($VenvExecDir.Name)"
-
-# Set values required in priority: CmdLine, ConfigFile, Default
-# First, get the location of the virtual environment, it might not be
-# VenvExecDir if specified on the command line.
-if ($VenvDir) {
-    Write-Verbose "VenvDir given as parameter, using '$VenvDir' to determine values"
-}
-else {
-    Write-Verbose "VenvDir not given as a parameter, using parent directory name as VenvDir."
-    $VenvDir = $VenvExecDir.Parent.FullName.TrimEnd("\\/")
-    Write-Verbose "VenvDir=$VenvDir"
-}
-
-# Next, read the `pyvenv.cfg` file to determine any required value such
-# as `prompt`.
-$pyvenvCfg = Get-PyVenvConfig -ConfigDir $VenvDir
-
-# Next, set the prompt from the command line, or the config file, or
-# just use the name of the virtual environment folder.
-if ($Prompt) {
-    Write-Verbose "Prompt specified as argument, using '$Prompt'"
-}
-else {
-    Write-Verbose "Prompt not specified as argument to script, checking pyvenv.cfg value"
-    if ($pyvenvCfg -and $pyvenvCfg['prompt']) {
-        Write-Verbose "  Setting based on value in pyvenv.cfg='$($pyvenvCfg['prompt'])'"
-        $Prompt = $pyvenvCfg['prompt'];
-    }
-    else {
-        Write-Verbose "  Setting prompt based on parent's directory's name. (Is the directory name passed to venv module when creating the virtual environment)"
-        Write-Verbose "  Got leaf-name of $VenvDir='$(Split-Path -Path $venvDir -Leaf)'"
-        $Prompt = Split-Path -Path $venvDir -Leaf
-    }
-}
-
-Write-Verbose "Prompt = '$Prompt'"
-Write-Verbose "VenvDir='$VenvDir'"
-
-# Deactivate any currently active virtual environment, but leave the
-# deactivate function in place.
-deactivate -nondestructive
-
-# Now set the environment variable VIRTUAL_ENV, used by many tools to determine
-# that there is an activated venv.
-$env:VIRTUAL_ENV = $VenvDir
-
-if (-not $Env:VIRTUAL_ENV_DISABLE_PROMPT) {
-
-    Write-Verbose "Setting prompt to '$Prompt'"
-
-    # Set the prompt to include the env name
-    # Make sure _OLD_VIRTUAL_PROMPT is global
-    function global:_OLD_VIRTUAL_PROMPT { "" }
-    Copy-Item -Path function:prompt -Destination function:_OLD_VIRTUAL_PROMPT
-    New-Variable -Name _PYTHON_VENV_PROMPT_PREFIX -Description "Python virtual environment prompt prefix" -Scope Global -Option ReadOnly -Visibility Public -Value $Prompt
-
-    function global:prompt {
-        Write-Host -NoNewline -ForegroundColor Green "($_PYTHON_VENV_PROMPT_PREFIX) "
-        _OLD_VIRTUAL_PROMPT
-    }
-    $env:VIRTUAL_ENV_PROMPT = $Prompt
-}
-
-# Clear PYTHONHOME
-if (Test-Path -Path Env:PYTHONHOME) {
-    Copy-Item -Path Env:PYTHONHOME -Destination Env:_OLD_VIRTUAL_PYTHONHOME
-    Remove-Item -Path Env:PYTHONHOME
-}
-
-# Add the venv to the PATH
-Copy-Item -Path Env:PATH -Destination Env:_OLD_VIRTUAL_PATH
-$Env:PATH = "$VenvExecDir$([System.IO.Path]::PathSeparator)$Env:PATH"

.venv/bin/activate

@@ -1,70 +0,0 @@
-# This file must be used with "source bin/activate" *from bash*
-# You cannot run it directly
-
-deactivate () {
-    # reset old environment variables
-    if [ -n "${_OLD_VIRTUAL_PATH:-}" ] ; then
-        PATH="${_OLD_VIRTUAL_PATH:-}"
-        export PATH
-        unset _OLD_VIRTUAL_PATH
-    fi
-    if [ -n "${_OLD_VIRTUAL_PYTHONHOME:-}" ] ; then
-        PYTHONHOME="${_OLD_VIRTUAL_PYTHONHOME:-}"
-        export PYTHONHOME
-        unset _OLD_VIRTUAL_PYTHONHOME
-    fi
-
-    # Call hash to forget past commands. Without forgetting
-    # past commands the $PATH changes we made may not be respected
-    hash -r 2> /dev/null
-
-    if [ -n "${_OLD_VIRTUAL_PS1:-}" ] ; then
-        PS1="${_OLD_VIRTUAL_PS1:-}"
-        export PS1
-        unset _OLD_VIRTUAL_PS1
-    fi
-
-    unset VIRTUAL_ENV
-    unset VIRTUAL_ENV_PROMPT
-    if [ ! "${1:-}" = "nondestructive" ] ; then
-    # Self destruct!
-        unset -f deactivate
-    fi
-}
-
-# unset irrelevant variables
-deactivate nondestructive
-
-# on Windows, a path can contain colons and backslashes and has to be converted:
-if [ "${OSTYPE:-}" = "cygwin" ] || [ "${OSTYPE:-}" = "msys" ] ; then
-    # transform D:\path\to\venv to /d/path/to/venv on MSYS
-    # and to /cygdrive/d/path/to/venv on Cygwin
-    export VIRTUAL_ENV=$(cygpath /home/nschense/Medphys_Research/senior_research_thesis/.venv)
-else
-    # use the path as-is
-    export VIRTUAL_ENV=/home/nschense/Medphys_Research/senior_research_thesis/.venv
-fi
-
-_OLD_VIRTUAL_PATH="$PATH"
-PATH="$VIRTUAL_ENV/"bin":$PATH"
-export PATH
-
-# unset PYTHONHOME if set
-# this will fail if PYTHONHOME is set to the empty string (which is bad anyway)
-# could use `if (set -u; : $PYTHONHOME) ;` in bash
-if [ -n "${PYTHONHOME:-}" ] ; then
-    _OLD_VIRTUAL_PYTHONHOME="${PYTHONHOME:-}"
-    unset PYTHONHOME
-fi
-
-if [ -z "${VIRTUAL_ENV_DISABLE_PROMPT:-}" ] ; then
-    _OLD_VIRTUAL_PS1="${PS1:-}"
-    PS1='(.venv) '"${PS1:-}"
-    export PS1
-    VIRTUAL_ENV_PROMPT='(.venv) '
-    export VIRTUAL_ENV_PROMPT
-fi
-
-# Call hash to forget past commands. Without forgetting
-# past commands the $PATH changes we made may not be respected
-hash -r 2> /dev/null

.venv/bin/activate.csh

@@ -1,27 +0,0 @@
-# This file must be used with "source bin/activate.csh" *from csh*.
-# You cannot run it directly.
-
-# Created by Davide Di Blasi <davidedb@gmail.com>.
-# Ported to Python 3.3 venv by Andrew Svetlov <andrew.svetlov@gmail.com>
-
-alias deactivate 'test $?_OLD_VIRTUAL_PATH != 0 && setenv PATH "$_OLD_VIRTUAL_PATH" && unset _OLD_VIRTUAL_PATH; rehash; test $?_OLD_VIRTUAL_PROMPT != 0 && set prompt="$_OLD_VIRTUAL_PROMPT" && unset _OLD_VIRTUAL_PROMPT; unsetenv VIRTUAL_ENV; unsetenv VIRTUAL_ENV_PROMPT; test "\!:*" != "nondestructive" && unalias deactivate'
-
-# Unset irrelevant variables.
-deactivate nondestructive
-
-setenv VIRTUAL_ENV /home/nschense/Medphys_Research/senior_research_thesis/.venv
-
-set _OLD_VIRTUAL_PATH="$PATH"
-setenv PATH "$VIRTUAL_ENV/"bin":$PATH"
-
-
-set _OLD_VIRTUAL_PROMPT="$prompt"
-
-if (! "$?VIRTUAL_ENV_DISABLE_PROMPT") then
-    set prompt = '(.venv) '"$prompt"
-    setenv VIRTUAL_ENV_PROMPT '(.venv) '
-endif
-
-alias pydoc python -m pydoc
-
-rehash

.venv/bin/activate.fish

@@ -1,69 +0,0 @@
-# This file must be used with "source <venv>/bin/activate.fish" *from fish*
-# (https://fishshell.com/). You cannot run it directly.
-
-function deactivate  -d "Exit virtual environment and return to normal shell environment"
-    # reset old environment variables
-    if test -n "$_OLD_VIRTUAL_PATH"
-        set -gx PATH $_OLD_VIRTUAL_PATH
-        set -e _OLD_VIRTUAL_PATH
-    end
-    if test -n "$_OLD_VIRTUAL_PYTHONHOME"
-        set -gx PYTHONHOME $_OLD_VIRTUAL_PYTHONHOME
-        set -e _OLD_VIRTUAL_PYTHONHOME
-    end
-
-    if test -n "$_OLD_FISH_PROMPT_OVERRIDE"
-        set -e _OLD_FISH_PROMPT_OVERRIDE
-        # prevents error when using nested fish instances (Issue #93858)
-        if functions -q _old_fish_prompt
-            functions -e fish_prompt
-            functions -c _old_fish_prompt fish_prompt
-            functions -e _old_fish_prompt
-        end
-    end
-
-    set -e VIRTUAL_ENV
-    set -e VIRTUAL_ENV_PROMPT
-    if test "$argv[1]" != "nondestructive"
-        # Self-destruct!
-        functions -e deactivate
-    end
-end
-
-# Unset irrelevant variables.
-deactivate nondestructive
-
-set -gx VIRTUAL_ENV /home/nschense/Medphys_Research/senior_research_thesis/.venv
-
-set -gx _OLD_VIRTUAL_PATH $PATH
-set -gx PATH "$VIRTUAL_ENV/"bin $PATH
-
-# Unset PYTHONHOME if set.
-if set -q PYTHONHOME
-    set -gx _OLD_VIRTUAL_PYTHONHOME $PYTHONHOME
-    set -e PYTHONHOME
-end
-
-if test -z "$VIRTUAL_ENV_DISABLE_PROMPT"
-    # fish uses a function instead of an env var to generate the prompt.
-
-    # Save the current fish_prompt function as the function _old_fish_prompt.
-    functions -c fish_prompt _old_fish_prompt
-
-    # With the original prompt function renamed, we can override with our own.
-    function fish_prompt
-        # Save the return status of the last command.
-        set -l old_status $status
-
-        # Output the venv prompt; color taken from the blue of the Python logo.
-        printf "%s%s%s" (set_color 4B8BBE) '(.venv) ' (set_color normal)
-
-        # Restore the return status of the previous command.
-        echo "exit $old_status" | .
-        # Output the original/"old" prompt.
-        _old_fish_prompt
-    end
-
-    set -gx _OLD_FISH_PROMPT_OVERRIDE "$VIRTUAL_ENV"
-    set -gx VIRTUAL_ENV_PROMPT '(.venv) '
-end

.venv/bin/f2py

@@ -1,8 +0,0 @@
-#!/home/nschense/Medphys_Research/senior_research_thesis/.venv/bin/python
-# -*- coding: utf-8 -*-
-import re
-import sys
-from numpy.f2py.f2py2e import main
-if __name__ == '__main__':
-    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
-    sys.exit(main())

.venv/bin/fonttools

@@ -1,8 +0,0 @@
-#!/home/nschense/Medphys_Research/senior_research_thesis/.venv/bin/python
-# -*- coding: utf-8 -*-
-import re
-import sys
-from fontTools.__main__ import main
-if __name__ == '__main__':
-    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
-    sys.exit(main())

.venv/bin/nc3tonc4

@@ -1,8 +0,0 @@
-#!/home/nschense/Medphys_Research/senior_research_thesis/.venv/bin/python
-# -*- coding: utf-8 -*-
-import re
-import sys
-from netCDF4.utils import nc3tonc4
-if __name__ == '__main__':
-    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
-    sys.exit(nc3tonc4())

.venv/bin/nc4tonc3

@@ -1,8 +0,0 @@
-#!/home/nschense/Medphys_Research/senior_research_thesis/.venv/bin/python
-# -*- coding: utf-8 -*-
-import re
-import sys
-from netCDF4.utils import nc4tonc3
-if __name__ == '__main__':
-    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
-    sys.exit(nc4tonc3())

.venv/bin/ncinfo

@@ -1,8 +0,0 @@
-#!/home/nschense/Medphys_Research/senior_research_thesis/.venv/bin/python
-# -*- coding: utf-8 -*-
-import re
-import sys
-from netCDF4.utils import ncinfo
-if __name__ == '__main__':
-    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
-    sys.exit(ncinfo())

.venv/bin/numpy-config

@@ -1,8 +0,0 @@
-#!/home/nschense/Medphys_Research/senior_research_thesis/.venv/bin/python
-# -*- coding: utf-8 -*-
-import re
-import sys
-from numpy._configtool import main
-if __name__ == '__main__':
-    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
-    sys.exit(main())

.venv/bin/pip

@@ -1,8 +0,0 @@
-#!/home/nschense/Medphys_Research/senior_research_thesis/.venv/bin/python
-# -*- coding: utf-8 -*-
-import re
-import sys
-from pip._internal.cli.main import main
-if __name__ == '__main__':
-    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
-    sys.exit(main())

.venv/bin/pip3

@@ -1,8 +0,0 @@
-#!/home/nschense/Medphys_Research/senior_research_thesis/.venv/bin/python
-# -*- coding: utf-8 -*-
-import re
-import sys
-from pip._internal.cli.main import main
-if __name__ == '__main__':
-    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
-    sys.exit(main())

.venv/bin/pip3.12

@@ -1,8 +0,0 @@
-#!/home/nschense/Medphys_Research/senior_research_thesis/.venv/bin/python
-# -*- coding: utf-8 -*-
-import re
-import sys
-from pip._internal.cli.main import main
-if __name__ == '__main__':
-    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
-    sys.exit(main())

.venv/bin/pyftmerge

@@ -1,8 +0,0 @@
-#!/home/nschense/Medphys_Research/senior_research_thesis/.venv/bin/python
-# -*- coding: utf-8 -*-
-import re
-import sys
-from fontTools.merge import main
-if __name__ == '__main__':
-    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
-    sys.exit(main())

.venv/bin/pyftsubset

@@ -1,8 +0,0 @@
-#!/home/nschense/Medphys_Research/senior_research_thesis/.venv/bin/python
-# -*- coding: utf-8 -*-
-import re
-import sys
-from fontTools.subset import main
-if __name__ == '__main__':
-    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
-    sys.exit(main())

.venv/bin/python

@@ -1 +0,0 @@
-/usr/bin/python

.venv/bin/python3

@@ -1 +0,0 @@
-python

.venv/bin/python3.12

@@ -1 +0,0 @@
-python

.venv/bin/ttx

@@ -1,8 +0,0 @@
-#!/home/nschense/Medphys_Research/senior_research_thesis/.venv/bin/python
-# -*- coding: utf-8 -*-
-import re
-import sys
-from fontTools.ttx import main
-if __name__ == '__main__':
-    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
-    sys.exit(main())

.venv/lib64

@@ -1 +0,0 @@
-lib

.venv/pyvenv.cfg

@@ -1,5 +0,0 @@
-home = /usr/bin
-include-system-site-packages = false
-version = 3.12.3
-executable = /usr/bin/python3.12
-command = /usr/bin/python -m venv /home/nschense/Medphys_Research/senior_research_thesis/.venv

.venv/share/man/man1/ttx.1

@@ -1,225 +0,0 @@
-.Dd May 18, 2004
-.\" ttx is not specific to any OS, but contrary to what groff_mdoc(7)
-.\" seems to imply, entirely omitting the .Os macro causes 'BSD' to
-.\" be used, so I give a zero-width space as its argument.
-.Os \&
-.\" The "FontTools Manual" argument apparently has no effect in
-.\" groff 1.18.1. I think it is a bug in the -mdoc groff package.
-.Dt TTX 1 "FontTools Manual"
-.Sh NAME
-.Nm ttx
-.Nd tool for manipulating TrueType and OpenType fonts
-.Sh SYNOPSIS
-.Nm
-.Bk
-.Op Ar option ...
-.Ek
-.Bk
-.Ar file ...
-.Ek
-.Sh DESCRIPTION
-.Nm
-is a tool for manipulating TrueType and OpenType fonts.  It can convert
-TrueType and OpenType fonts to and from an
-.Tn XML Ns -based format called
-.Tn TTX .
-.Tn TTX
-files have a
-.Ql .ttx
-extension.
-.Pp
-For each
-.Ar file
-argument it is given,
-.Nm
-detects whether it is a
-.Ql .ttf ,
-.Ql .otf
-or
-.Ql .ttx
-file and acts accordingly: if it is a
-.Ql .ttf
-or
-.Ql .otf
-file, it generates a
-.Ql .ttx
-file; if it is a
-.Ql .ttx
-file, it generates a
-.Ql .ttf
-or
-.Ql .otf
-file.
-.Pp
-By default, every output file is created in the same directory as the
-corresponding input file and with the same name except for the
-extension, which is substituted appropriately.
-.Nm
-never overwrites existing files; if necessary, it appends a suffix to
-the output file name before the extension, as in
-.Pa Arial#1.ttf .
-.Ss "General options"
-.Bl -tag -width ".Fl t Ar table"
-.It Fl h
-Display usage information.
-.It Fl d Ar dir
-Write the output files to directory
-.Ar dir
-instead of writing every output file to the same directory as the
-corresponding input file.
-.It Fl o Ar file
-Write the output to
-.Ar file
-instead of writing it to the same directory as the
-corresponding input file.
-.It Fl v
-Be verbose.  Write more messages to the standard output describing what
-is being done.
-.It Fl a
-Allow virtual glyphs ID's on compile or decompile.
-.El
-.Ss "Dump options"
-The following options control the process of dumping font files
-(TrueType or OpenType) to
-.Tn TTX
-files.
-.Bl -tag -width ".Fl t Ar table"
-.It Fl l
-List table information.  Instead of dumping the font to a
-.Tn TTX
-file, display minimal information about each table.
-.It Fl t Ar table
-Dump table
-.Ar table .
-This option may be given multiple times to dump several tables at
-once.  When not specified, all tables are dumped.
-.It Fl x Ar table
-Exclude table
-.Ar table
-from the list of tables to dump.  This option may be given multiple
-times to exclude several tables from the dump.  The
-.Fl t
-and
-.Fl x
-options are mutually exclusive.
-.It Fl s
-Split tables.  Dump each table to a separate
-.Tn TTX
-file and write (under the name that would have been used for the output
-file if the
-.Fl s
-option had not been given) one small
-.Tn TTX
-file containing references to the individual table dump files.  This
-file can be used as input to
-.Nm
-as long as the referenced files can be found in the same directory.
-.It Fl i
-.\" XXX: I suppose OpenType programs (exist and) are also affected.
-Don't disassemble TrueType instructions.  When this option is specified,
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-.Tn TTX
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-.Tn TTX
-files.
-.It Fl y Ar n
-When decompiling a TrueType Collection (TTC) file,
-decompile font number
-.Ar n ,
-starting from 0.
-.El
-.Ss "Compilation options"
-The following options control the process of compiling
-.Tn TTX
-files into font files (TrueType or OpenType):
-.Bl -tag -width ".Fl t Ar table"
-.It Fl m Ar fontfile
-Merge the input
-.Tn TTX
-file
-.Ar file
-with
-.Ar fontfile .
-No more than one
-.Ar file
-argument can be specified when this option is used.
-.It Fl b
-Don't recalculate glyph bounding boxes.  Use the values in the
-.Tn TTX
-file as is.
-.El
-.Sh "THE TTX FILE FORMAT"
-You can find some information about the
-.Tn TTX
-file format in
-.Pa documentation.html .
-In particular, you will find in that file the list of tables understood by
-.Nm
-and the relations between TrueType GlyphIDs and the glyph names used in
-.Tn TTX
-files.
-.Sh EXAMPLES
-In the following examples, all files are read from and written to the
-current directory.  Additionally, the name given for the output file
-assumes in every case that it did not exist before
-.Nm
-was invoked.
-.Pp
-Dump the TrueType font contained in
-.Pa FreeSans.ttf
-to
-.Pa FreeSans.ttx :
-.Pp
-.Dl ttx FreeSans.ttf
-.Pp
-Compile
-.Pa MyFont.ttx
-into a TrueType or OpenType font file:
-.Pp
-.Dl ttx MyFont.ttx
-.Pp
-List the tables in
-.Pa FreeSans.ttf
-along with some information:
-.Pp
-.Dl ttx -l FreeSans.ttf
-.Pp
-Dump the
-.Sq cmap
-table from
-.Pa FreeSans.ttf
-to
-.Pa FreeSans.ttx :
-.Pp
-.Dl ttx -t cmap FreeSans.ttf
-.Sh NOTES
-On MS\-Windows and MacOS,
-.Nm
-is available as a graphical application to which files can be dropped.
-.Sh SEE ALSO
-.Pa documentation.html
-.Pp
-.Xr fontforge 1 ,
-.Xr ftinfo 1 ,
-.Xr gfontview 1 ,
-.Xr xmbdfed 1 ,
-.Xr Font::TTF 3pm
-.Sh AUTHORS
-.Nm
-was written by
-.An -nosplit
-.An "Just van Rossum" Aq just@letterror.com .
-.Pp
-This manual page was written by
-.An "Florent Rougon" Aq f.rougon@free.fr
-for the Debian GNU/Linux system based on the existing FontTools
-documentation.  It may be freely used, modified and distributed without
-restrictions.
-.\" For Emacs:
-.\" Local Variables:
-.\" fill-column: 72
-.\" sentence-end: "[.?!][]\"')}]*\\($\\| $\\|   \\|  \\)[   \n]*"
-.\" sentence-end-double-space: t
-.\" End:

analysis/sensitivity_analysis.py

@@ -92,3 +92,6 @@ plt.tight_layout()
 
 plt.savefig(plots_dir / "sensitivity_accuracy_vs_ensemble_size.png")
 # End of Copilot section
+
+
+#