|
|
@@ -0,0 +1,36 @@
|
|
|
+#DCIS
|
|
|
+
|
|
|
+A project to investigate long term impact of heart irraditaion in breast cancer.
|
|
|
+
|
|
|
+## Slicer
|
|
|
+
|
|
|
+This project relates on [Slicer][]. I am using [SlicerLabkeyExtension][SLE] codes to run Slicer on a headless server. Codes in `slicerScripts` are run via
|
|
|
+
|
|
|
+```bash
|
|
|
+SlicerLabkeyExtension/slicerScripts/runSlicer.sh [thisProject]/slicerScripts/parseDicom.py config.json
|
|
|
+```
|
|
|
+
|
|
|
+If you are not using headless servers, X is not a problem, and one can run via
|
|
|
+
|
|
|
+```bash
|
|
|
+Slicer --no-main-window --python-scripts [thisProject]/slicerScripts/parseDicom.py config.json
|
|
|
+```
|
|
|
+
|
|
|
+### Slicer notes
|
|
|
+
|
|
|
+Code was tested on `Slicer-5.4.0-linux-amd64` with SlicerRT.
|
|
|
+
|
|
|
+## Labkey
|
|
|
+
|
|
|
+Based on [Labkey][] database server using [labkeyInterface][].
|
|
|
+
|
|
|
+## Orthanc
|
|
|
+
|
|
|
+Depends on [orthancInterface][]. [Orthanc][] is an open source PACS implementation.
|
|
|
+
|
|
|
+[SLE]: https://git0.fmf.uni-lj.si/studen/SlicerLabkeyExtension
|
|
|
+[labkeyInterface]: https://git0.fmf.uni-lj.si/studen/labkeyInterface
|
|
|
+[orthancInterface]: https://git0.fmf.uni-lj.si/studen/orthancInterface
|
|
|
+[Slicer]: https://www.slicer.org/
|
|
|
+[Orthanc]: https://www.orthanc-server.com/
|
|
|
+[Labkey]: https://labkey.org
|
Andrej Studen