{ "cells": [ { "cell_type": "code", "execution_count": 36, "id": "d1318b4b-4ae5-4bfa-9084-fe93eaa255f3", "metadata": {}, "outputs": [], "source": [ "import importlib\n", "import sys\n", "import os\n", " \n", "def getImporter():\n", " nixSuite=os.path.join(os.path.expanduser('~'),'software','src','nixSuite')\n", " sys.path.append(os.path.join(nixSuite,'wrapper'))\n", " import nixWrapper\n", " nixWrapper.loadLibrary('labkeyInterface')\n", " import importXLSX\n", " importlib.reload(importXLSX)\n", " return importXLSX\n", "\n", "def modify(qv,columnName):\n", " if columnName=='ROBOVI - najbližji':\n", " qv=qv.replace('mm','')\n", " qv=qv.replace(',','.')\n", " return qv\n", "\n", "def modifyRT(qv,columnName):\n", " pMap={'obsevano področje':parseRTArea,\n", " 'Boost':parseX,\n", " 'tehnika obsevanja':parseRTTechnique,\n", " 'tehnika boosta':parseBoostTechnique,\n", " 'obsevanje v globokem vdihu':parseX\n", " }\n", " for p in pMap:\n", " if columnName==p:\n", " qv=pMap[p](qv)\n", " return qv \n", "\n", "def parseMap(qv,vmap):\n", " for v in vmap:\n", " if qv==v:\n", " return vmap[v]\n", " return qv\n", "\n", "def parseRTArea(qv):\n", " vmap={'3 (cela dojka + lezija)':3, \n", " '3 - cela dojka + ležišče':3,\n", " '3 - leva dojka in ležišče':3,\n", " 'X':None\n", " }\n", " return parseMap(qv,vmap)\n", " \n", "def parseX(qv):\n", " vmap={'X':None}\n", " return parseMap(qv,vmap)\n", "\n", "\n", "def parseRTTechnique(qv):\n", " vmap={'3D fif':4,\n", " '3 - ABC':5,\n", " '3 - 3D + E boost':6,\n", " '3 - ABC, 3D-CRT':7,\n", " '3D fif - ABC, SIB':8,\n", " '3D fif - ABC':10,\n", " 'DIBH 3D + FREE 3D fif':11,\n", " 'X':None}\n", " \n", " return parseMap(qv,vmap)\n", " \n", "def parseBoostTechnique(qv):\n", " vmap={'X':None,\n", " 'elekt.':2,\n", " 'e boost':2}\n", " \n", " return parseMap(qv,vmap)\n", " \n", "\n", "def getGlobalId(df,r):\n", " possibleLabels=['ID','zaporedna št v raziskavi','ID študija']\n", " rawId=None\n", " for x in possibleLabels:\n", " try:\n", " rawId=str(df.at[r,x])\n", " except KeyError:\n", " continue\n", " #drop spaces\n", " rawId=rawId.replace(' ','')\n", " #print(rawId)\n", " return rawId\n", "\n", "def convertLookup(xlsColumnName):\n", " return False\n", "\n", "\n", " \n", " " ] }, { "cell_type": "code", "execution_count": 38, "id": "1005793b-d809-415d-8df4-8e63af22535d", "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "loadLibrary\n", "remoteSourcesURL https://git0.fmf.uni-lj.si/studen/nixSuite/raw/master/remoteResources/resources.json\n", "{'labkeyInterface': {'url': 'https://git0.fmf.uni-lj.si/studen/labkeyInterface/archive/master.zip', 'branch': 'master', 'modules': []}, 'irAEMM': {'url': 'https://git0.fmf.uni-lj.si/studen/iraemm/archive/master.zip', 'branch': 'master', 'modules': ['iraemmBrowser']}, 'SlicerLabkeyExtension': {'url': 'https://git0.fmf.uni-lj.si/studen/SlicerLabkeyExtension/archive/SlicerExtensionIndex.zip', 'branch': 'SlicerExtensionIndex', 'modules': ['labkeyBrowser']}, 'limfomiPET': {'url': 'https://git0.fmf.uni-lj.si/studen/limfomiPET/archive/master.zip', 'branch': 'master', 'modules': ['imageBrowser', 'segmentationBrowser']}, 'parseConfig': {'url': 'https://git0.fmf.uni-lj.si/studen/parseConfig/archive/master.zip', 'branch': 'master', 'modules': []}, 'orthancInterface': {'url': 'https://git0.fmf.uni-lj.si/studen/orthancInterface/archive/master.zip', 'branch': 'master', 'modules': []}, 'dynamicSPECT': {'url': 'https://git0.fmf.uni-lj.si/studen/dynamicSPECT/archive/master.zip', 'branch': 'master', 'modules': ['imageBrowser']}}\n", "{'url': 'https://git0.fmf.uni-lj.si/studen/labkeyInterface/archive/master.zip', 'branch': 'master', 'modules': []}\n", "File C:\\Users\\studen\\temp\\labkeyInterface.zip: True\n", "User: andrej studen CSRF: 9a6cdab0becd1015a30de73a099d1f50\n", "dateVars: []\n", "aliases: {'Popisna številka': 'idOIL', 'obsevano področje': 'rtArea', 'TD_Gy': 'totalDose', 'D_fr': 'dosePerFraction', 'Boost': 'boost', 'tehnika boosta': 'boostTechnique', 'TD_Boost': 'boostTotalDose', 'D_Boost_fr': 'boostDoseFractions', 'tehnika obsevanja': 'rtTechnique', 'obsevanje v globokem vdihu': 'rtDIBH', 'Opomba': 'comment'}\n", "Index(['ID študija', 'Ime in priimek', 'Popisna številka', 'RT',\n", " 'obsevano področje', 'TD_Gy ', 'D_fr', 'Boost', 'tehnika boosta',\n", " 'TD_Boost', 'D_Boost_fr', 'tehnika obsevanja',\n", " 'obsevanje v globokem vdihu', 'Opomba',\n", " 'RT podatki (stolpci E-M) preverjeni (da/ne)',\n", " 'Vrisane strukture (da/ne)', 'Plan uvožen (da/ne)',\n", " 'Vključene v slikovno diagnostiko', 'Unnamed: 18', 'Unnamed: 19'],\n", " dtype='object')\n", "Index: 199\n", "[{'ParticipantId': '1', 'idOIL': '6028/19', 'rtArea': 1, 'totalDose': 50.0, 'dosePerFraction': 2.0, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 1, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '2', 'idOIL': '5911/19', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '3', 'idOIL': '6146/19', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '4', 'idOIL': '6286/19', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '5', 'idOIL': '6289/19', 'rtArea': 3, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': 10.0, 'boostDoseFractions': 2.0, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '6', 'idOIL': '6334/19', 'rtArea': 3, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': 16.0, 'boostDoseFractions': 2.0, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '7', 'idOIL': '6439/19', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '8', 'idOIL': '6064/19', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '9', 'idOIL': '6556/19', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '10', 'idOIL': '6795/19', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '11', 'idOIL': '473/16', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '12', 'idOIL': '6854/19', 'rtArea': 3, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': 10.0, 'boostDoseFractions': 2.0, 'rtTechnique': 1, 'rtDIBH': 1, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '13', 'idOIL': '6071/19', 'rtArea': 3, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': 10.0, 'boostDoseFractions': 2.0, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '14', 'idOIL': '6251/19', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '15', 'idOIL': '6483/19', 'rtArea': 1, 'totalDose': 42.72, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 5, 'rtDIBH': 1, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '16', 'idOIL': '7194/19', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 6, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '17', 'idOIL': '7217/19', 'rtArea': 3, 'totalDose': 46.69, 'dosePerFraction': 2.03, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': 61.18, 'boostDoseFractions': 2.66, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '18', 'idOIL': '4274/97', 'rtArea': 3, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': 45.84, 'boostDoseFractions': 3.056, 'rtTechnique': 5, 'rtDIBH': 1, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '20', 'idOIL': '7087/19', 'rtArea': 1, 'totalDose': 45.57, 'dosePerFraction': 2.17, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': 55.86, 'boostDoseFractions': 2.66, 'rtTechnique': 1, 'rtDIBH': 1, 'comment': 'SIB', 'SequenceNum': 1}, {'ParticipantId': '21', 'idOIL': '6823/19', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '22', 'idOIL': '7627/19', 'rtArea': 1, 'totalDose': 42.72, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': None, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '23', 'idOIL': '7319/19', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': 2, 'boostTotalDose': 16.0, 'boostDoseFractions': 2.0, 'rtTechnique': None, 'rtDIBH': 1, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '24', 'idOIL': '4510/93', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': None, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '25', 'idOIL': '60/20', 'rtArea': 3, 'totalDose': 50.0, 'dosePerFraction': 2.0, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': 10.0, 'boostDoseFractions': 2.0, 'rtTechnique': None, 'rtDIBH': 1, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '26', 'idOIL': '7365/19', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 9, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '28', 'idOIL': '6812/19', 'rtArea': 1, 'totalDose': 42.72, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': 2, 'boostTotalDose': 13.0, 'boostDoseFractions': 2.6, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '33', 'idOIL': '1012/20', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '35', 'idOIL': '778/20', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '36', 'idOIL': '1132/20', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '37', 'idOIL': '4202/92', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '40', 'idOIL': '1212/20', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '42', 'idOIL': '1141/20', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 9, 'rtDIBH': 9, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '43', 'idOIL': '422/20', 'rtArea': 1, 'totalDose': 50.0, 'dosePerFraction': 2.0, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '44', 'idOIL': '1750/20', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '46', 'idOIL': '1789/20', 'rtArea': 1, 'totalDose': 45.75, 'dosePerFraction': 3.05, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 9, 'rtDIBH': 9, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '47', 'idOIL': '759/20', 'rtArea': 1, 'totalDose': 45.75, 'dosePerFraction': 2.17, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': 55.86, 'boostDoseFractions': 2.66, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': 'SIB', 'SequenceNum': 1}, {'ParticipantId': '48', 'idOIL': '4355/19', 'rtArea': 1, 'totalDose': 45.75, 'dosePerFraction': 2.17, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': 55.86, 'boostDoseFractions': 2.66, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': 'SIB', 'SequenceNum': 1}, {'ParticipantId': '49', 'idOIL': '1864/20', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': 2, 'boostTotalDose': 16.0, 'boostDoseFractions': 2.0, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '50', 'idOIL': '1746/20', 'rtArea': 1, 'totalDose': 42.72, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': 16.0, 'boostDoseFractions': 2.0, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '51', 'idOIL': '787/20', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '53', 'idOIL': '1752/20', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': 16.0, 'boostDoseFractions': 2.0, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '54', 'idOIL': '2099/20', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '55', 'idOIL': '6669/91', 'rtArea': 3, 'totalDose': 45.75, 'dosePerFraction': 2.17, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': 55.86, 'boostDoseFractions': 2.66, 'rtTechnique': 7, 'rtDIBH': 1, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '56', 'idOIL': '4198/20', 'rtArea': 3, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': None, 'boostTotalDose': 45.75, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 1, 'comment': 'DIBH', 'SequenceNum': 1}, {'ParticipantId': '57', 'idOIL': '4000/20', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '59', 'idOIL': '2260/20', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '61', 'idOIL': '2474/18', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 1, 'comment': 'DIBH', 'SequenceNum': 1}, {'ParticipantId': '62', 'idOIL': '4682/20', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '63', 'idOIL': '5002/20', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '65', 'idOIL': '4691/20', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': 'ABC', 'SequenceNum': 1}, {'ParticipantId': '66', 'idOIL': '4918/20', 'rtArea': 1, 'totalDose': 42.72, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': 2, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '67', 'idOIL': '7919/14', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 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None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '152', 'idOIL': '1942/22', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '153', 'idOIL': '1570/22', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '154', 'idOIL': '998/11', 'rtArea': 2, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 11, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '155', 'idOIL': '4150/96', 'rtArea': 2, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': 1, 'boostTotalDose': 45.75, 'boostDoseFractions': 3.05, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '156', 'idOIL': '2026/22', 'rtArea': 2, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': 1, 'boostTotalDose': 16.0, 'boostDoseFractions': 2.0, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '157', 'idOIL': '2205/22', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 2, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '158', 'idOIL': '2001/22', 'rtArea': 2, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '159', 'idOIL': '3269/04', 'rtArea': 2, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '160', 'idOIL': '2506/22', 'rtArea': 2, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': 1, 'boostTotalDose': 45.75, 'boostDoseFractions': 3.05, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '161', 'idOIL': '4010/22', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '162', 'idOIL': '4342/22', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '163', 'idOIL': '1698/07', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '164', 'idOIL': '6027/92', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '165', 'idOIL': '2062/22', 'rtArea': 2, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': 1, 'boostTotalDose': 45.75, 'boostDoseFractions': 3.05, 'rtTechnique': 1, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '166', 'idOIL': '4074/22', 'rtArea': 2, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': 1, 'boostTotalDose': 16.0, 'boostDoseFractions': 2.0, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '167', 'idOIL': '2681/22', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '168', 'idOIL': '6897/15', 'rtArea': 2, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': 1, 'boostTotalDose': 10.0, 'boostDoseFractions': 2.0, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '169', 'idOIL': '5268/22', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '170', 'idOIL': '4680/22', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '171', 'idOIL': '6243/22', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.26, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 2, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '172', 'idOIL': '6929/22', 'rtArea': 2, 'totalDose': 45.75, 'dosePerFraction': 2.17, 'boost': 1, 'boostTechnique': 1, 'boostTotalDose': 55.86, 'boostDoseFractions': 2.66, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '173', 'idOIL': '6020/16', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 2, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '174', 'idOIL': '6958/22', 'rtArea': 2, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 1, 'boostTechnique': 1, 'boostTotalDose': 45.75, 'boostDoseFractions': 3.05, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '175', 'idOIL': '7253/22', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 2, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '176', 'idOIL': '1237/95', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 2, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '177', 'idOIL': '6488/22', 'rtArea': 1, 'totalDose': 40.05, 'dosePerFraction': 2.67, 'boost': 0, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 1, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '178', 'idOIL': '3289/16', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 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{'ParticipantId': '205', 'idOIL': '1235/23', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '206', 'idOIL': '2509/23', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '207', 'idOIL': '5185/23', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '208', 'idOIL': '5132/23', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 2, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '209', 'idOIL': '5427/23', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '210', 'idOIL': '5531/23', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '211', 'idOIL': '5428/23', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '212', 'idOIL': '5020/23', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 2, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '213', 'idOIL': '6714/23', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 2, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '214', 'idOIL': '6909/23', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 2, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '215', 'idOIL': '6860/23', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '216', 'idOIL': '6031/23', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '217', 'idOIL': '8022/23', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': 4, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}, {'ParticipantId': '218', 'idOIL': '8067/23', 'rtArea': None, 'totalDose': None, 'dosePerFraction': None, 'boost': None, 'boostTechnique': None, 'boostTotalDose': None, 'boostDoseFractions': None, 'rtTechnique': None, 'rtDIBH': None, 'comment': None, 'SequenceNum': 1}]\n", "Updating 5 entries\n", "User: andrej studen CSRF: 742fe1637468f101da711f46ebdca491\n", "Inserting 194 entries\n", "User: andrej studen CSRF: 04ff9a3c1db820922c3e62a89210fb80\n" ] } ], "source": [ "importXLSX=getImporter()\n", "filename=os.path.join('z:','DCIS_import1.xlsx')\n", "filename1=os.path.join('z:','DCISimportRT.xlsx')\n", "#print(os.path.isfile(filename))\n", "\n", "#Demographics\n", "parServer={'server':'onko-nix',\n", " 'project':'DCIS/Study',\n", " 'schema':'study'}\n", "\n", "parXLS= {'sheet_name':0, 'skiprows':6}\n", "parXLS1= {'sheet_name':1, 'skiprows':0}\n", "parXLS2= {'sheet_name':0, 'skiprows':0}\n", "\n", "#DEMOGRAPHICS\n", "parD={'query':'Demographics'}\n", "\n", "##PART 1\n", "#importData(parServer| parD | parXLS,filename,getGlobalId,dryRun=True)\n", "\n", "#PART 2\n", "#importData(parServer| parD | parXLS1,filename,getGlobalId,dryRun=False)\n", "\n", "#COMORBIDITIES\n", "parC={'query':'comorbidities'}\n", "#importData(parServer | parC | parXLS,filename,getGlobalId,dryRun=True)\n", "\n", "#TOXICITY\n", "parT={'query':'toxicity'}\n", "\n", "## VISIT 1\n", "parTV1={'usecols':'A,O:AG', 'seqNumOffset':0}\n", "#importData(parServer | parT | parXLS | parTV1,filename,getGlobalId,dryRun=True)\n", "\n", "## VISIT 2\n", "parTV2={'usecols':'A,AH:AZ', 'seqNumOffset':1}\n", "#importData(parServer | parT | parXLS | parTV2,filename,getGlobalId,dryRun=True)\n", "\n", "## VISIT 3\n", "parTV3={'usecols':'A,BA:BP', 'seqNumOffset':2}\n", "#importData(parServer | parT | parXLS | parTV3,filename,getGlobalId,dryRun=True)\n", "\n", "## VISIT 4\n", "parTV4={'usecols':'A,BQ:CF', 'seqNumOffset':3}\n", "#importData(parServer | parT | parXLS | parTV4,filename,getGlobalId,dryRun=True)\n", "\n", "## VISIT 5\n", "parTV5={'usecols':'A,CG:CW', 'seqNumOffset':4}\n", "#importData(parServer | parT | parXLS | parTV5,filename,getGlobalId,dryRun=True)\n", "\n", "# CANCER DATA\n", "parCA={'query':'cancerData'}\n", "#importData(parServer | parCA | parXLS1,filename,getGlobalId,dryRun=True)\n", "\n", "#SURGERY\n", "parSG={'query':'surgery'}\n", "#importData(parServer | parSG | parXLS1,filename,getGlobalId,dryRun=True)\n", "\n", "#RT\n", "parRT={'query':'radiotherapy'}\n", "#importData(parServer | parRT | parXLS1,filename,getGlobalId,dryRun=True)\n", "importXLSX.importData(parServer | parRT | parXLS2,filename1,getId=getGlobalId,\n", " modify=modifyRT,\n", " convertLookup=convertLookup,\n", " dryRun=False,\n", " debug=False)\n", "\n", "#laboratoryTests\n", "parLT={'query':'laboratoryTests'}\n", "## VISIT 1\n", "parLTV1={'usecols':'A,AO,AS,AW', 'seqNumOffset':1}\n", "#importData(parServer | parLT | parXLS1 | parLTV1,filename,getGlobalId,dryRun=False)\n", "\n", "## VISIT 2\n", "parLTV2={'usecols':'A,AP,AT,AX', 'seqNumOffset':2}\n", "#importData(parServer | parLT | parXLS1 | parLTV2,filename,getGlobalId,dryRun=False)\n", "\n", "## VISIT 3\n", "parLTV3={'usecols':'A,AQ,AU,AY', 'seqNumOffset':3}\n", "#importData(parServer | parLT | parXLS1 | parLTV3,filename,getGlobalId,dryRun=False)\n", "\n", "\n", "## VISIT 4\n", "parLTV4={'usecols':'A,AR,AV,AZ', 'seqNumOffset':4}\n", "#importXLSX.importData(parServer | parLT | parXLS1 | parLTV4,filename,getGlobalId,modify,convertLookup,dryRun=True)\n", "\n", "## IMAGING1\n", "parIm={'query':'Imaging1','usecols':'A,C'}\n", "#importXLSX.importData(parServer | parIm | parXLS2 ,filename1,getGlobalId,modify,convertLookup,dryRun=False,debug=False)\n", "\n", "\n", "#df=pandas.read_excel(filename,skiprows=6,usecols=parsT5['usecols'])\n", "#print(df)\n", "\n", "#for repeated evaluations, apply columnt offset (or selection) and provide seqNumOffset\n" ] }, { "cell_type": "code", "execution_count": null, "id": "8b5d6212-0ee7-4f3e-8b26-a9c6024823ab", "metadata": {}, "outputs": [], "source": [] } ], "metadata": { "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.9.0" } }, "nbformat": 4, "nbformat_minor": 5 }