EMBRACE/dataExplorer/loadPatient.py

import slicer
import loadDicom
import re
import slicerNetwork
import os
import subprocess

fValue=loadDicom.dicomValue
dicomModify="/afs/f9.ijs.si/home/studen/software/install/"
dicomModify+="dicomModify/bin/dicomModify"

class loadPatient(slicer.ScriptedLoadableModule.ScriptedLoadableModule):
    def __init__(self,parent):
        slicer.ScriptedLoadableModule.ScriptedLoadableModule.__init__(self, parent)
        self.className="loadPatient"
        self.parent.title="loadPatient"

class loadPatientLogic(slicer.ScriptedLoadableModule.ScriptedLoadableModuleLogic):
    def __init__(self,parent):
       slicer.ScriptedLoadableModule.ScriptedLoadableModuleLogic.__init__(self, parent)

       #self.plugin=slicer.modules.dicomPlugins['DicomRtImportExportPlugin']()
       #self.volumePlugin=slicer.modules.dicomPlugins['DICOMScalarVolumePlugin']()
       self.dicomLoader=loadDicom.loadDicomLogic(self)

       #self.rtReader=slicer.vtkSlicerDicomRtReader()

       #start SSL/TLS configuration

    def setURIHandler(self, net):
        self.sNet=net

    def load(self,label):
        #clear previous data
        debug=True
        loadDicom.clearNodes()
        
        containerPath='Matej/studija'
        subFolder=''
        dirUrl=containerPath+"/@files"+subFolder
        dir=os.path.join(dirUrl,label)
        #load segmentations
        rs=dir+"/RS/DICOM";
        self.dicomLoader.load(self.sNet,rs)


        rsMatch='None'
        dataset="ImagingVisitsManaged"
        fSet=self.sNet.filterDataset(containerPath,dataset,'EMBRACE_ID',label)
        fData=fSet['rows']
        for r in fData:
            if r['type']!='RS':
                continue
            row=r

        if row['rsMatch']==None:
            return

        if row['rsMatch']=='NONE':
            return

        dicomDir=dir+'/'+row['rsMatch']+'/DICOM'
        if debug:
            print "Loading {}".format(dicomDir)
        self.dicomLoader.load(self.sNet,dicomDir)