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Adding Cotinine model

Andrej 2 years ago
parent
commit
ac5b35f7bb
1 changed files with 76 additions and 0 deletions
  1. 76 0
      models/cCotinine.json

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models/cCotinine.json

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+{
+   "compartments":["adipose","brain","heart","kidney","liver",
+   "splanchnic","stomach","muscle","skin","testes","remainder","lung",
+   "excrement","arterial","venous","source"],
+   "volumes":{
+      "unit":"g",
+      "adipose":10,
+      "brain":1.2,
+      "heart":1,
+      "kidney":2,
+      "liver":11,
+      "lung":1.2,
+      "muscle":125,
+      "skin":43.8,
+      "splanchnic":15,
+      "stomach":1.1,
+      "testes":2.5,
+      "remainder":15.8,
+      "venous":13.6,
+      "arterial":6.8},
+   "flowNotes":"liver:arterial is sum of liver,splanchnic and stomach",
+   "flowNotes1":"liver:arterial=3.55+20.25+1.9",
+   "flows":{
+      "unit":"ml/min",
+      "(arterial,venous):adipose":2.55,
+      "(arterial,venous):brain":0.78,
+      "(arterial,venous):heart":4.2,
+      "(arterial,venous):kidney":16.61,
+      "arterial:liver":3.55,
+      "liver:venous":25.7,
+      "(arterial,venous):lung":80,
+      "(arterial,venous):muscle":16.25,
+      "(arterial,venous):skin":7.1,
+      "(arterial,liver):splanchnic":20.25,
+      "(arterial,liver):stomach":1.9,
+      "(arterial,venous):testes":1.9,
+      "(arterial,venous):remainder":4.91,
+      "arterial":80,
+      "venous":80},
+   "commentSources":"constants in concentration units per s",
+   "sources":{
+      "arterial":{"name":"exponential","k":-0.005,"constant":0},
+      "venous":{"name":"Heavyside","limit":30,"value":1.22e3}},
+   "commentBindings":"split to flow and diffusion dominated",
+   "bindings": {
+      "flowComments":"group common sources or targets with braces",
+      "flow":[
+         "(adipose,brain,heart,kidney,liver,muscle,skin,testes,remainder)->venous",
+         "(splanchnic,stomach)->liver",
+         "arterial->(adipose,brain,heart,kidney,liver,muscle,skin,testes,remainder,splanchnic,stomach)",
+         "venous->lung",
+         "lung->arterial"],
+      "diffusionComments":"source->target strength per s",
+      "liverToExcrementNotes":"CL=422ml/min,PC=9.1,f=0.15,V=11g->k=0.105/s",
+      "sourceToArterialNotes":"ka=0.001/s in paper",
+      "comment:source->venous":0.005,
+      "diffusion":{
+         "liver->excrement":0.0105}},
+    "pcComments":"always related to outflow of organs", 
+    "partitionCoefficients":{
+       "adipose":0.04,
+       "brain":0.27,
+       "heart":0.28,
+       "kidney":0.72,
+       "liver":0.39,
+       "lung":0.3,
+       "muscle":0.29,
+       "remainder":0.18,
+       "skin":0.18,
+       "splanchnic":0.31,
+       "stomach":0.18,
+       "testes":0.18},
+     "sensitivityCalculation":{
+        "parameters":["partitionCoefficients"]
+     }
+}