PBPK_public/models/cDiazepam.old.json

{
   "compartments":["adipose","brain","heart","kidney","liver",
   "splanchnic","stomach","muscle","skin","testes","remainder","lung",
   "excrement","arterial","venous","source"],
   "volumes":{
      "unit":"g",
      "adipose":10,
      "brain":1.2,
      "heart":1,
      "kidney":2,
      "liver":11,
      "lung":1.2,
      "muscle":125,
      "skin":43.8,
      "splanchnic":15,
      "stomach":1.1,
      "testes":2.5,
      "remainder":15.8,
      "venous":13.6,
      "arterial":6.8},
   "flowNotes":"liver:arterial is sum of liver,splanchnic and stomach",
   "flowNotes1":"liver:arterial=3.55+20.25+1.9",
   "flows":{
      "unit":"ml/min",
      "(arterial,venous):adipose":2.55,
      "(arterial,venous):brain":0.78,
      "(arterial,venous):heart":4.2,
      "(arterial,venous):kidney":16.61,
      "arterial:liver":3.55,
      "liver:venous":25.7,
      "(arterial,venous):lung":80,
      "(arterial,venous):muscle":16.25,
      "(arterial,venous):skin":7.1,
      "(arterial,liver):splanchnic":20.25,
      "(arterial,liver):stomach":1.9,
      "(arterial,venous):testes":1.9,
      "(arterial,venous):remainder":4.91,
      "arterial":80,
      "venous":80},
   "commentSources":"constants in concentration units per s",
   "sources":{
      "arterial":{"name":"exponential","k":-0.005,"constant":0},
      "venous":{"name":"Heavyside","limit":300,"value":0.61e2}},
   "commentBindings":"split to flow and diffusion dominated",
   "bindings": {
      "flowComments":"group common sources or targets with braces",
      "flow":[
         "(adipose,brain,heart,kidney,liver,muscle,skin,testes,remainder)->venous",
            
         "(splanchnic,stomach)->liver",
         "arterial->(adipose,brain,heart,kidney,liver,muscle,skin,testes,remainder,splanchnic,stomach)",
         "venous->lung",
         "lung->arterial"],
      "diffusionComments":"source->target strength per s",
      "liverToExcrementNotes":"CL=422ml/min,PC=9.1,f=0.15,V=11g->k=0.0105/s",
      "sourceToArterialNotes":"ka=0.001/s in paper",
      "comment:source->venous":0.005,
      "diffusion":{
         "liver->excrement":0.0105}},
    "pcComments":"always related to outflow of organs", 
    "partitionCoefficients":{
       "adipose":23.1,
       "brain":2.2,
       "heart":4.3,
       "kidney":5.2,
       "liver":9.1,
       "lung":5.3,
       "muscle":2.4,
       "remainder":16.5,
       "skin":3.2,
       "splanchnic":4.3,
       "stomach":4.5,
       "testes":4.7}
}