Removing files from other projects

pythonScripts/IPNMURetro.ipynb

@@ -1,277 +0,0 @@
-{
- "cells": [
-  {
-   "cell_type": "code",
-   "execution_count": 1,
-   "metadata": {},
-   "outputs": [
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "/usr/lib/python3/dist-packages/urllib3/connection.py:391: SubjectAltNameWarning: Certificate for merlin.fmf.uni-lj.si has no `subjectAltName`, falling back to check for a `commonName` for now. This feature is being removed by major browsers and deprecated by RFC 2818. (See https://github.com/urllib3/urllib3/issues/497 for details.)\n",
-      "  warnings.warn(\n"
-     ]
-    },
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "User: andrej studen CSRF: 32c779fa1a1ab9e7e7faef77cecb497b\n"
-     ]
-    }
-   ],
-   "source": [
-    "import sys\n",
-    "import os\n",
-    "import SimpleITK\n",
-    "import numpy\n",
-    "import matplotlib.pyplot\n",
-    "sys.path.append(os.path.join(os.path.expanduser('~'),'software','src','nixSuite','wrapper'))\n",
-    "import nixWrapper\n",
-    "nixWrapper.loadLibrary('labkeyInterface')\n",
-    "import labkeyInterface\n",
-    "net=labkeyInterface.labkeyInterface()\n",
-    "fconfig=os.path.join(os.path.expanduser('~'),'.labkey','network.json')\n",
-    "net.init(fconfig)\n",
-    "net.getCSRF()\n",
-    "import labkeyFileBrowser\n",
-    "sys.path.append(os.getcwd())\n",
-    "import downloadPatient\n",
-    "fb=labkeyFileBrowser.labkeyFileBrowser(net)\n",
-    "project='iPNUMMretro/Study'\n",
-    "import labkeyDatabaseBrowser\n",
-    "db=labkeyDatabaseBrowser.labkeyDB(net)\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 4,
-   "metadata": {},
-   "outputs": [
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "/usr/lib/python3/dist-packages/urllib3/connection.py:391: SubjectAltNameWarning: Certificate for merlin.fmf.uni-lj.si has no `subjectAltName`, falling back to check for a `commonName` for now. This feature is being removed by major browsers and deprecated by RFC 2818. (See https://github.com/urllib3/urllib3/issues/497 for details.)\n",
-      "  warnings.warn(\n"
-     ]
-    },
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "User: andrej studen CSRF: 69a6cc70190d3c8f1f5857c5d603dbb9\n",
-      "User: andrej studen CSRF: df2ea4ef6c979a45f710a2f79d0530ce\n",
-      "User: andrej studen CSRF: 34ae204996301d140e3c051c07d8fcb3\n",
-      "User: andrej studen CSRF: a58f633a57c1201f1be7b8b95241ad42\n",
-      "User: andrej studen CSRF: 415d49070cc00e04efa3f00a102f80a4\n",
-      "User: andrej studen CSRF: a40c77345b4ea005d416f05a33faf153\n",
-      "User: andrej studen CSRF: 7ce68765272c66e98d4550d531d14ccf\n",
-      "User: andrej studen CSRF: dcc82d6bcfc559f35084fc034adac5c6\n",
-      "User: andrej studen CSRF: 72a8c55c9f8ab633ee980a6bc90dbdbe\n",
-      "User: andrej studen CSRF: 8d15b66a59bd1bdfbe3e19c51b1d77ab\n",
-      "User: andrej studen CSRF: a3cc53dd7b3b6cca89e0bc988bb50f1a\n",
-      "User: andrej studen CSRF: 2cc75dd343abfa17053946ebb027b680\n",
-      "User: andrej studen CSRF: 0041826593805b012ca2b2461405e6f7\n",
-      "User: andrej studen CSRF: ea7d309ba7f7c1c2f8218b1dab4bac73\n",
-      "User: andrej studen CSRF: 8dc5ad9fb8acb64cb90e42fc21e8d235\n",
-      "User: andrej studen CSRF: 5c4b724db156ba43664937eced1ba73e\n",
-      "User: andrej studen CSRF: da74dae2fd8b40d2d4e4d88c0e0d4b9e\n",
-      "User: andrej studen CSRF: b831a8f565b4e7afdb36eea0f632a4d5\n",
-      "User: andrej studen CSRF: 923531bf685977dfb6f8d1fe27fd65b6\n",
-      "User: andrej studen CSRF: 047c58be84bad8ec3c7279cbce67e5b2\n",
-      "User: andrej studen CSRF: a412199fa3e1b49dbfca587458da5f06\n",
-      "User: andrej studen CSRF: 6479fa39f99c9aa2939236843d2f9bfa\n",
-      "User: andrej studen CSRF: bc23c5bba318366b52f3cf5ecaad67d6\n",
-      "User: andrej studen CSRF: 8b74e9aefd277aa95fb62f57856a25d5\n",
-      "User: andrej studen CSRF: d982cabadaabca8fa1ad5a700128f3b0\n",
-      "User: andrej studen CSRF: 6b189061dec97a9560577dce926fcc60\n",
-      "User: andrej studen CSRF: 4fce7e99168086df29fd92394c629cdd\n",
-      "User: andrej studen CSRF: 760ce8a75f3ca17014e904972989dc80\n",
-      "User: andrej studen CSRF: f2c44dc6b5d6c2c9f824d5a3ea3ed258\n",
-      "User: andrej studen CSRF: d36d3b39831f017e38c7a3a4049b018d\n",
-      "User: andrej studen CSRF: ddea691409b7fc597ecdc1872abb796a\n",
-      "User: andrej studen CSRF: ccfb2e0e805dccc7cb0d6ebe338dfae6\n",
-      "User: andrej studen CSRF: 6cea935122e45cf6af08ae1796a51aa7\n",
-      "User: andrej studen CSRF: bab07a2005f906ebb6aea6a8ef768637\n",
-      "User: andrej studen CSRF: 9b8e0be6c2884230b8f7c66b2951cae1\n",
-      "User: andrej studen CSRF: 13fc502bc258182adfe993aa67c753f5\n",
-      "User: andrej studen CSRF: cfb8511b1639aa4af74beb879c7b0112\n",
-      "User: andrej studen CSRF: 6329f79452eedcc8d75074a1427d073e\n",
-      "User: andrej studen CSRF: 9b2cafa86752c9e1614cc0ec8331b6ce\n",
-      "User: andrej studen CSRF: bfdc7a857e16bc1497399937f783266b\n",
-      "User: andrej studen CSRF: cb1edcabf693c0cf742f42f3a01d9a34\n",
-      "User: andrej studen CSRF: 467d5494e0a0ead094e5f562287f8379\n",
-      "User: andrej studen CSRF: 9650d3b574b26bada541d4ab8b31b573\n",
-      "User: andrej studen CSRF: 1c886f16a9351bf516a54619cbed6ca6\n",
-      "User: andrej studen CSRF: 341be998fa427fcb2969c8e04d72d1b2\n",
-      "User: andrej studen CSRF: c8772e2b77d48ef9e9c7a24b2e8e5480\n",
-      "User: andrej studen CSRF: dc0ceca8848c13c826059ccaf837d41e\n",
-      "User: andrej studen CSRF: 70e6226e28a02cd03e944ff29c0d7173\n",
-      "User: andrej studen CSRF: 1e57d71ba1ed390dc9a8caa2da267869\n",
-      "User: andrej studen CSRF: 21a5e342233d2dbf97409d3a802024c9\n"
-     ]
-    },
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "/usr/lib/python3/dist-packages/urllib3/connection.py:391: SubjectAltNameWarning: Certificate for merlin.fmf.uni-lj.si has no `subjectAltName`, falling back to check for a `commonName` for now. This feature is being removed by major browsers and deprecated by RFC 2818. (See https://github.com/urllib3/urllib3/issues/497 for details.)\n",
-      "  warnings.warn(\n"
-     ]
-    },
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "User: andrej studen CSRF: 3913d677d05b007c5a5dab0bea80fc8e\n",
-      "User: andrej studen CSRF: 1ca2c5013e7b2af6d79c1e770ff2ced0\n",
-      "User: andrej studen CSRF: 864241f376a680de523e625e36fcfdcb\n",
-      "User: andrej studen CSRF: 397f6b20897f8e8bcb29530fbe08edd5\n",
-      "User: andrej studen CSRF: 673243a4bc95c638f33dbd42880ffcd9\n",
-      "User: andrej studen CSRF: 5e555b3ea1898e8160acf702ce84a0b4\n",
-      "User: andrej studen CSRF: fe92ba55552183faa8ce501e0197e4dc\n",
-      "User: andrej studen CSRF: 5aefef49c3e413886bba7d0d33dc990b\n",
-      "User: andrej studen CSRF: d62078815e465785d6f28ce155bf5b21\n",
-      "User: andrej studen CSRF: b9b5349dd557dfd3b434569ca78e2ddb\n",
-      "User: andrej studen CSRF: 1d4edefb66c3ade35507f07435b899d0\n",
-      "User: andrej studen CSRF: 682a48a5f68dcbea7bc6b76c2cfc4c50\n",
-      "User: andrej studen CSRF: 2ee3b1d8db7b855a61adec664c5d5d7d\n",
-      "User: andrej studen CSRF: dcde305c5e1029852bb80d8d79784b65\n",
-      "User: andrej studen CSRF: 9ec61693577ea635cba08d9ecdd1126c\n",
-      "User: andrej studen CSRF: 6b221d62fbc8b98a3940391d8a793aad\n",
-      "User: andrej studen CSRF: 531335433e47813fb26815bec1f63555\n",
-      "User: andrej studen CSRF: e5384bd229cd2c1b442588c0e4964153\n",
-      "User: andrej studen CSRF: 2739ca9574bf710d24771e41d3861f58\n",
-      "User: andrej studen CSRF: 10fbc69621bad1b2349afc877ee5b61c\n",
-      "User: andrej studen CSRF: d4f0b26efbdcf3df2632974ce5d59d1e\n",
-      "User: andrej studen CSRF: 620fee6f7950d7c61eabbc69c4ea540b\n",
-      "User: andrej studen CSRF: 928ee08cedcf479ab3a31d15c47c2775\n",
-      "User: andrej studen CSRF: 7bc3ca323488d9d0a17ecf6db476302b\n",
-      "User: andrej studen CSRF: 49285fa264545ca2e2f482b6ca54c3c0\n",
-      "User: andrej studen CSRF: 7092e582105f95edcceb09c8f4516f89\n",
-      "User: andrej studen CSRF: b653fb7dc304032b601d5ae7e91b1379\n",
-      "User: andrej studen CSRF: 79a7ea3c5c4e3f588f9d9ed427acb8eb\n",
-      "User: andrej studen CSRF: b6864adb7a2dfc7c30bf82454cc0f025\n",
-      "User: andrej studen CSRF: 5d536680ebfeeb984ae63ca91ae6ccd1\n",
-      "User: andrej studen CSRF: 9c3706733b883020b28ce19a12a7759b\n",
-      "User: andrej studen CSRF: 7ac91d45f0896d15c7e9f0a40ec69133\n",
-      "User: andrej studen CSRF: d7678386072223afe2dd1d3638c5270f\n",
-      "User: andrej studen CSRF: 5f6fa03146ab93a8ddb7e05b57b25f46\n",
-      "User: andrej studen CSRF: f4fcda21486baff30fde4599704e8a8a\n",
-      "User: andrej studen CSRF: 6cc1f1970bb82360261b9c84f0dcc9ba\n",
-      "User: andrej studen CSRF: e0322945421f4ce5d979167be680e3c2\n",
-      "User: andrej studen CSRF: 485858317a4c890813fea2eb82f2e111\n",
-      "User: andrej studen CSRF: 77c66e66e0ec65f26c16bf8ac45a89d5\n",
-      "User: andrej studen CSRF: 17b5c93518fd30e5843de17e57ad70a8\n",
-      "User: andrej studen CSRF: 63cbfaf3db5c6d9aa9858f4fa497b017\n",
-      "User: andrej studen CSRF: c0fd39b1a257abda4553bc1cbf068282\n",
-      "User: andrej studen CSRF: 94601071b23d3bb9ddcbccd2c4edd7d8\n",
-      "User: andrej studen CSRF: ae12c6ccfcd48b077403c8610f36552f\n",
-      "User: andrej studen CSRF: 81c66a17dd60da82204c4eb550498dcf\n",
-      "User: andrej studen CSRF: 26b62c0bbde2947b71f63a36f8c4865d\n",
-      "User: andrej studen CSRF: 640049cbded232fb50a2f563858069dc\n",
-      "User: andrej studen CSRF: ab8eff7579da8ceea8399e0297c06397\n",
-      "User: andrej studen CSRF: ac97288cedd98dba2407e6942a14c6b4\n",
-      "User: andrej studen CSRF: dcbbb57025ce4ca560c630434963aebb\n"
-     ]
-    },
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "/usr/lib/python3/dist-packages/urllib3/connection.py:391: SubjectAltNameWarning: Certificate for merlin.fmf.uni-lj.si has no `subjectAltName`, falling back to check for a `commonName` for now. This feature is being removed by major browsers and deprecated by RFC 2818. (See https://github.com/urllib3/urllib3/issues/497 for details.)\n",
-      "  warnings.warn(\n"
-     ]
-    },
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "User: andrej studen CSRF: d2306f6ff5a2e9cbdea66458d243ff7b\n",
-      "User: andrej studen CSRF: 51e9623cccce067303edba8f7c146523\n",
-      "User: andrej studen CSRF: d680cee55f76e874bc3054ca71e6bc8a\n",
-      "User: andrej studen CSRF: b22bb7d41c0889f5479e7445183a382d\n",
-      "User: andrej studen CSRF: bfaaca5dcfc75340cd2f52a8bf942512\n",
-      "User: andrej studen CSRF: 7a3626ea6f2f6e87d63df1c9f4dd9642\n",
-      "User: andrej studen CSRF: 0ef4a808c86b95f4b2f1b70677600c3c\n",
-      "User: andrej studen CSRF: 06a3d6bd96b4a6dc10f49b7346601851\n",
-      "User: andrej studen CSRF: bf7c249f7ed80644918e3c45afcffa13\n",
-      "User: andrej studen CSRF: 8b71f06362c69c86d907aeafec9cdc32\n",
-      "User: andrej studen CSRF: 57f8d0dd513af472618cd9467c8435e0\n",
-      "User: andrej studen CSRF: 45623b36c0e3503cac371fd0fe52b8c6\n",
-      "User: andrej studen CSRF: e557c5ffc72917d628d6b3f1fd5ed975\n",
-      "User: andrej studen CSRF: 56881eea158549254fd142e5d2381dd2\n",
-      "User: andrej studen CSRF: c82061f923fbcf8f015d78708ecb9e40\n",
-      "User: andrej studen CSRF: aa0ba68654476564558ab05d79f2d668\n",
-      "User: andrej studen CSRF: f748fa4e9a1e4439f04b08958cd20e47\n",
-      "User: andrej studen CSRF: 758fd7feaff615b1fed553366df1df17\n",
-      "User: andrej studen CSRF: 931b1620cba3ded0be959b34a684bf79\n",
-      "User: andrej studen CSRF: 7fb1b4748834988241473b67fd744580\n",
-      "User: andrej studen CSRF: 4dc9086e556866d23ed14466552ff0ad\n",
-      "User: andrej studen CSRF: 22250e430f2087a1536f46978c83c4cf\n",
-      "User: andrej studen CSRF: 5c26d5444120b5426dd6fd798eb8116b\n",
-      "User: andrej studen CSRF: a1408e511dc1ce6bc088712e68d62850\n",
-      "User: andrej studen CSRF: 2ac51545cdd29d4b03e05c186d1a2178\n",
-      "User: andrej studen CSRF: f533ff36eed804e68e2f079b321e2488\n",
-      "User: andrej studen CSRF: 31947d596b526f1c8785bef85e5c5e84\n",
-      "User: andrej studen CSRF: 1131387965cd094e49e236d09908c8a5\n",
-      "User: andrej studen CSRF: 867c0a253a2e5f404bdd2d4a45b34a02\n",
-      "User: andrej studen CSRF: ce0e07dbb05fa93ee309cfbd687297cd\n",
-      "User: andrej studen CSRF: ccf7a6eff5325ca6bb1d3dfcf5fab059\n",
-      "User: andrej studen CSRF: f81ede4fb5864e8eaed9ec646e2e2234\n",
-      "User: andrej studen CSRF: 8e6b1a7f25d86d99d3c1183447723c2c\n",
-      "User: andrej studen CSRF: 6be35e87d7b9e268d7baadf7973f77df\n",
-      "User: andrej studen CSRF: 8b98ecf7d7fc4137b0d0ea4347c3b20b\n",
-      "User: andrej studen CSRF: a40680c1acb0e5d5544e59b7d85ca2aa\n",
-      "User: andrej studen CSRF: bdf93309062161467e41d11357577af2\n",
-      "User: andrej studen CSRF: bf5312dd4a3ff96ed803840b48e11fe3\n",
-      "User: andrej studen CSRF: b1a85c6741c44c057b38335076d8fb0b\n",
-      "User: andrej studen CSRF: b2a0682b5533dbc41b38264010d818d0\n",
-      "User: andrej studen CSRF: e51a7e739ee01150caa771db4f8fc90c\n",
-      "User: andrej studen CSRF: d8b11ac286048bc2eebcb11e3f668873\n",
-      "User: andrej studen CSRF: 7aeadb6e5ae01bcf66b3e9d9609c0274\n",
-      "User: andrej studen CSRF: 1eb3123c3b287cd1e7432c87e0ca3897\n",
-      "User: andrej studen CSRF: 39117a6ced7a5629124e9679e552919d\n"
-     ]
-    }
-   ],
-   "source": [
-    "ds=db.selectRows(project,'study','Imaging1',[])\n",
-    "for r in ds['rows']:\n",
-    "    r['report']='[REPORT]'\n",
-    "    db.modifyRows('update',project,'study','Imaging1',[r])\n",
-    "    "
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
-   "outputs": [],
-   "source": []
-  }
- ],
- "metadata": {
-  "kernelspec": {
-   "display_name": "Python 3",
-   "language": "python",
-   "name": "python3"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.8.5"
-  }
- },
- "nbformat": 4,
- "nbformat_minor": 4
-}