 Andrej
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8d8c79e32b
Updating analysis.py to work with modified version of segmentation.py
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1 rok temu |
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Andrej
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aca8e9e402
Resolving merging mismatches
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1 rok temu |
 Andrej Studen@Labkey-KNM
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985248eb9f
Changing loops in doPixelAnalysis
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1 rok temu |
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Andrej Studen@Labkey-KNM
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a4028e9849
Minor corrections to doAnalysis
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1 rok temu |
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Andrej Studen@Labkey-KNM
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86ae324590
Adding IVF plot of fits to batch of files to be stored in database
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1 rok temu |
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Andrej Studen@Labkey-KNM
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a65f79315e
Adjusting to NRRD based segmentations
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1 rok temu |
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Andrej Studen@Labkey-KNM
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b83c9bf7f6
getData to handle potential subdirectory at remote location
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1 rok temu |
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Andrej Studen@Labkey-KNM
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18e26aadd9
Adding quit to generateCenters
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1 rok temu |
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Andrej Studen@Labkey-KNM
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032bbc54b8
Correcting fit functions to use delays, in some rare conditions non-offseted time values were still used
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1 rok temu |
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Andrej Studen@Labkey-KNM
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285e42984e
Adding ploting of IVF fits in fitCentersIVF
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1 rok temu |
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Andrej Studen@Labkey-KNM
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71be3a9b0f
Preventing fitCenters to generate plots of fits
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1 rok temu |
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Andrej Studen@Labkey-KNM
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74028781c2
Changing extractCenters to layout with first column for region index; multiple entries can be made for a single region
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1 rok temu |
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Andrej Studen@Labkey-KNM
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85cf688137
Adding matlab scripts to handle nrrd segmentations
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1 rok temu |
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Andrej Studen@Labkey-KNM
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338139ad91
Finishing matlab scripts with quit statement to prevent hangs on matlab completion
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1 rok temu |
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Andrej
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9fb3643710
Adapting pixel analysis to nrrd segmentation files
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1 rok temu |
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Andrej
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c50c321b24
Adding helper script for sorting data
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1 rok temu |
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Andrej
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146d1bf0f8
Modifying analyzePixelIVF.m to run with Slicer generated segmentations
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1 rok temu |
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Andrej Studen@Labkey-KNM
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e556aa5b32
Adding update status function to report progress
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1 rok temu |
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Andrej
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a1a06988c7
Segmentation, first try
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1 rok temu |
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Andrej
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1dbfdd22ef
Adding imageBrowser
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1 rok temu |
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Andrej
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ca707226aa
Adding imageBrowser and licensing under Mozilla license
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1 rok temu |
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Andrej Studen@Labkey-KNM
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8227bd308d
Adding virtualenv related requirements.txt
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1 rok temu |
 NIX Worker
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adac3b94ea
Delegating and implementing filter parsing in config.py
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1 rok temu |
|
NIX Worker
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905b4e8c9c
Delegating filter parsing to config
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1 rok temu |
|
NIX Worker
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6f536a609c
operable doSummary.py
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1 rok temu |
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NIX Worker
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cf5e2971b4
Adding doSummary.py
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1 rok temu |
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Andrej
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87d8bfd583
validating summaryIVF
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1 rok temu |
|
NIX Worker
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5e8f30d99f
Functionality to perfrom doPixelAnalysis.py
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1 rok temu |
|
Andrej
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15edb29494
Update to jupyter
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1 rok temu |
|
Andrej
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513370ed9e
Updates to getData and segmentation
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1 rok temu |
