 Andrej Studen@Labkey-KNM
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7f7c5fe190
Clearing merge conflicts
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1 vuosi sitten |
 Andrej
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8b606a3b56
Cleaning up listCreatedFiles in workflow
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1 vuosi sitten |
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Andrej
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012848dc66
Adding regularization to compartment fits
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1 vuosi sitten |
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Andrej
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ad99d7cd50
Recent updates
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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5bffcfe431
Cleared error from getData updateStatus, making sure that status is also checked for entries with converted images
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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eea087869e
Correcting typo in convertToNRRD
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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a0af1ed42c
Moving plotSegmentation from segmentation.py to plotData to avoid matplotlib dependency in Slicer, through convertToNRRD.py which depends on segmentation.py
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1 vuosi sitten |
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Andrej
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3c277a73dc
dealing with improperly set rows in convertToNRDD.py
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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fa3491d025
Adding code-word NONE to variable names to be excluded from filtering; previously, literal value NONE would be sought
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1 vuosi sitten |
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Andrej
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5cb119b5ff
Optimization hyperparameter lambda setting illustration for regularizing on IVF parameter A
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1 vuosi sitten |
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Andrej
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504c2ae9db
Adding port from matlab fitting to python fitting, new python code based on global optimization with lambda adjusted regularizer
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1 vuosi sitten |
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Andrej
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bf13fea75b
Compact way to generate values for the fits in matlab
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1 vuosi sitten |
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Andrej
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52c2ff00fa
Slight changes in assingFromDate and changing from getSeries to setSeries in assignOrthancStudy.ipynb
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1 vuosi sitten |
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Andrej
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f845223d25
Resolving merge errors in getData.py
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1 vuosi sitten |
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Andrej
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e098801656
Cosmetic changes to fitCenters
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1 vuosi sitten |
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Andrej
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8d8c79e32b
Updating analysis.py to work with modified version of segmentation.py
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1 vuosi sitten |
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Andrej
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aca8e9e402
Resolving merging mismatches
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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985248eb9f
Changing loops in doPixelAnalysis
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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a4028e9849
Minor corrections to doAnalysis
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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86ae324590
Adding IVF plot of fits to batch of files to be stored in database
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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a65f79315e
Adjusting to NRRD based segmentations
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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b83c9bf7f6
getData to handle potential subdirectory at remote location
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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18e26aadd9
Adding quit to generateCenters
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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032bbc54b8
Correcting fit functions to use delays, in some rare conditions non-offseted time values were still used
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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285e42984e
Adding ploting of IVF fits in fitCentersIVF
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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71be3a9b0f
Preventing fitCenters to generate plots of fits
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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74028781c2
Changing extractCenters to layout with first column for region index; multiple entries can be made for a single region
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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85cf688137
Adding matlab scripts to handle nrrd segmentations
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1 vuosi sitten |
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Andrej Studen@Labkey-KNM
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338139ad91
Finishing matlab scripts with quit statement to prevent hangs on matlab completion
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1 vuosi sitten |
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Andrej
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9fb3643710
Adapting pixel analysis to nrrd segmentation files
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1 vuosi sitten |
