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dynamicSPECT
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pythonScripts
Andrej 9fb3643710 Adapting pixel analysis to nrrd segmentation files %!s(int64=2) %!d(string=hai) anos
..
README.md bbe9982a4c Adding test.py slicer script %!s(int64=2) %!d(string=hai) anos
analysis.py 9fb3643710 Adapting pixel analysis to nrrd segmentation files %!s(int64=2) %!d(string=hai) anos
analyze.ipynb 345e0bdcec Minor updates to scripts, config file is also used in vangogh mode %!s(int64=2) %!d(string=hai) anos
assignOrthancStudy.ipynb c50c321b24 Adding helper script for sorting data %!s(int64=2) %!d(string=hai) anos
calculateCenters.py e556aa5b32 Adding update status function to report progress %!s(int64=2) %!d(string=hai) anos
calculateK1.ipynb 1440d682a0 Adding scripts %!s(int64=3) %!d(string=hai) anos
clusterAnalysis.ipynb 87d8bfd583 validating summaryIVF %!s(int64=2) %!d(string=hai) anos
clusterAnalysisLeftovers.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. %!s(int64=3) %!d(string=hai) anos
config.py e556aa5b32 Adding update status function to report progress %!s(int64=2) %!d(string=hai) anos
doAnalysis.py e556aa5b32 Adding update status function to report progress %!s(int64=2) %!d(string=hai) anos
doPixelAnalysis.py adac3b94ea Delegating and implementing filter parsing in config.py %!s(int64=2) %!d(string=hai) anos
doSummary.py 6f536a609c operable doSummary.py %!s(int64=2) %!d(string=hai) anos
downloadPatient.py 1440d682a0 Adding scripts %!s(int64=3) %!d(string=hai) anos
generateCenters.ipynb fde4aa8d47 Up to generate centers, including matlab files %!s(int64=3) %!d(string=hai) anos
getData.py e556aa5b32 Adding update status function to report progress %!s(int64=2) %!d(string=hai) anos
parseDicom.py 9941f28c57 Adding convertToNRRD.py script %!s(int64=3) %!d(string=hai) anos
pixelAnalysis.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. %!s(int64=3) %!d(string=hai) anos
plotK1.ipynb 9941f28c57 Adding convertToNRRD.py script %!s(int64=3) %!d(string=hai) anos
plotPolar.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. %!s(int64=3) %!d(string=hai) anos
plotViews.ipynb 1440d682a0 Adding scripts %!s(int64=3) %!d(string=hai) anos
segmentation.ipynb 15edb29494 Update to jupyter %!s(int64=2) %!d(string=hai) anos
segmentation.py 9fb3643710 Adapting pixel analysis to nrrd segmentation files %!s(int64=2) %!d(string=hai) anos
selectCenters.ipynb 1440d682a0 Adding scripts %!s(int64=3) %!d(string=hai) anos
statAnalysis.ipynb 1440d682a0 Adding scripts %!s(int64=3) %!d(string=hai) anos
table.ipynb 1440d682a0 Adding scripts %!s(int64=3) %!d(string=hai) anos
vtkInterface.py 9941f28c57 Adding convertToNRRD.py script %!s(int64=3) %!d(string=hai) anos

README.md

Instructions

Look at `clusterAnalysis.ipynb' for a step by step algorithm.

The only required files for analysis are:

  • ../slicerScripts/convertToNRRD.py
  • analysis.py
  • segmentation.py
  • getData.py
  • config.py
  • segmentation.ipynb
  • clusterAnalysis.ipynb

The rest are for backup only.