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dynamicSPECT
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pythonScripts
Andrej Studen@Labkey-KNM 7f7c5fe190 Clearing merge conflicts пре 1 година
..
LambdaOptimization.png 5cb119b5ff Optimization hyperparameter lambda setting illustration for regularizing on IVF parameter A пре 1 година
README.md bbe9982a4c Adding test.py slicer script пре 1 година
analysis.py 8d8c79e32b Updating analysis.py to work with modified version of segmentation.py пре 1 година
analyze.ipynb 345e0bdcec Minor updates to scripts, config file is also used in vangogh mode пре 1 година
assignOrthancStudy.ipynb ad99d7cd50 Recent updates пре 1 година
calculateCenters.py e556aa5b32 Adding update status function to report progress пре 1 година
calculateK1.ipynb 1440d682a0 Adding scripts пре 3 година
clusterAnalysis.ipynb 87d8bfd583 validating summaryIVF пре 1 година
clusterAnalysisLeftovers.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. пре 2 година
config.py 012848dc66 Adding regularization to compartment fits пре 1 година
doAnalysis.py a4028e9849 Minor corrections to doAnalysis пре 1 година
doPixelAnalysis.py 985248eb9f Changing loops in doPixelAnalysis пре 1 година
doSummary.py 6f536a609c operable doSummary.py пре 1 година
downloadPatient.py 1440d682a0 Adding scripts пре 3 година
fitData.py 012848dc66 Adding regularization to compartment fits пре 1 година
fitModel.py 012848dc66 Adding regularization to compartment fits пре 1 година
generateCenters.ipynb fde4aa8d47 Up to generate centers, including matlab files пре 2 година
geometry.py 504c2ae9db Adding port from matlab fitting to python fitting, new python code based on global optimization with lambda adjusted regularizer пре 1 година
getData.py 5bffcfe431 Cleared error from getData updateStatus, making sure that status is also checked for entries with converted images пре 1 година
loadData.py 012848dc66 Adding regularization to compartment fits пре 1 година
parseDicom.py 9941f28c57 Adding convertToNRRD.py script пре 2 година
pixelAnalysis.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. пре 2 година
plotData.py a0af1ed42c Moving plotSegmentation from segmentation.py to plotData to avoid matplotlib dependency in Slicer, through convertToNRRD.py which depends on segmentation.py пре 1 година
plotK1.ipynb 9941f28c57 Adding convertToNRRD.py script пре 2 година
plotPolar.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. пре 2 година
plotViews.ipynb 1440d682a0 Adding scripts пре 3 година
segmentation.ipynb 15edb29494 Update to jupyter пре 1 година
segmentation.py a0af1ed42c Moving plotSegmentation from segmentation.py to plotData to avoid matplotlib dependency in Slicer, through convertToNRRD.py which depends on segmentation.py пре 1 година
selectCenters.ipynb 1440d682a0 Adding scripts пре 3 година
statAnalysis.ipynb 1440d682a0 Adding scripts пре 3 година
table.ipynb 1440d682a0 Adding scripts пре 3 година
test.ipynb 8b606a3b56 Cleaning up listCreatedFiles in workflow пре 1 година
vtkInterface.py 9941f28c57 Adding convertToNRRD.py script пре 2 година
workflow.py 7f7c5fe190 Clearing merge conflicts пре 1 година

README.md

Instructions

Look at `clusterAnalysis.ipynb' for a step by step algorithm.

The only required files for analysis are:

  • ../slicerScripts/convertToNRRD.py
  • analysis.py
  • segmentation.py
  • getData.py
  • config.py
  • segmentation.ipynb
  • clusterAnalysis.ipynb

The rest are for backup only.