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dynamicSPECT
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pythonScripts
Andrej a1a06988c7 Segmentation, first try 2 years ago
..
README.md bbe9982a4c Adding test.py slicer script 2 years ago
analysis.py 905b4e8c9c Delegating filter parsing to config 2 years ago
analyze.ipynb 345e0bdcec Minor updates to scripts, config file is also used in vangogh mode 2 years ago
assignOrthancStudy.ipynb a1a06988c7 Segmentation, first try 2 years ago
calculateCenters.py adac3b94ea Delegating and implementing filter parsing in config.py 2 years ago
calculateK1.ipynb 1440d682a0 Adding scripts 3 years ago
clusterAnalysis.ipynb 87d8bfd583 validating summaryIVF 2 years ago
clusterAnalysisLeftovers.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. 3 years ago
config.py adac3b94ea Delegating and implementing filter parsing in config.py 2 years ago
doAnalysis.py adac3b94ea Delegating and implementing filter parsing in config.py 2 years ago
doPixelAnalysis.py adac3b94ea Delegating and implementing filter parsing in config.py 2 years ago
doSummary.py 6f536a609c operable doSummary.py 2 years ago
downloadPatient.py 1440d682a0 Adding scripts 3 years ago
generateCenters.ipynb fde4aa8d47 Up to generate centers, including matlab files 3 years ago
getData.py 513370ed9e Updates to getData and segmentation 2 years ago
parseDicom.py 9941f28c57 Adding convertToNRRD.py script 3 years ago
pixelAnalysis.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. 3 years ago
plotK1.ipynb 9941f28c57 Adding convertToNRRD.py script 3 years ago
plotPolar.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. 3 years ago
plotViews.ipynb 1440d682a0 Adding scripts 3 years ago
segmentation.ipynb 15edb29494 Update to jupyter 2 years ago
segmentation.py 5e8f30d99f Functionality to perfrom doPixelAnalysis.py 2 years ago
selectCenters.ipynb 1440d682a0 Adding scripts 3 years ago
statAnalysis.ipynb 1440d682a0 Adding scripts 3 years ago
table.ipynb 1440d682a0 Adding scripts 3 years ago
vtkInterface.py 9941f28c57 Adding convertToNRRD.py script 3 years ago

README.md

Instructions

Look at `clusterAnalysis.ipynb' for a step by step algorithm.

The only required files for analysis are:

  • ../slicerScripts/convertToNRRD.py
  • analysis.py
  • segmentation.py
  • getData.py
  • config.py
  • segmentation.ipynb
  • clusterAnalysis.ipynb

The rest are for backup only.