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@@ -1,13 +1,13 @@
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-### Immunotherapy related adverse effects toolbox
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+# Immunotherapy related adverse effects toolbox
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Manage images and data related to irAE project.
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-# Dependencies
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+### Dependencies
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To access LabKey, the [python API][labkeyInterface] was used.
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Anonymization and NIfTI conversion are based on phenomenal [nibabel][] tools.
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Data storage is provided by [Orthanc][] with associated [interface][orthancInterface].
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-#Usage
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+### Usage
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Anonymization must be run as a `tomcat8` user for access to data files. Check setup
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in the `anonymization.py` and run it with `runPython.sh anonymization.py`.
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