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@@ -7,6 +7,9 @@ A Slicer module was created to assist Radiology and Nuclear Medicine phsicians i
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reviewing the images. The following lists the installation, setup and usage of the module.
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## Installation
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+
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+Here is the installation [video][iraeMMInstallation] that shows required steps.
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+
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Download the [code][iraemm] and [dependencies][SlicerLabkeyExtension]. Unzip. To
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have Slicer know where the files are, open Slicer, and under Edit->Application settings
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select Modules section. Under Paths, click on Add and navigate to newly unzipped
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@@ -31,6 +34,9 @@ Once the data is entered, click on Init to check whether LabKey can be accessed.
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the button turns green, you are OK. Do `Save configuration`.
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## Usage
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+
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+See [video][iraeMMWorkflow] of module use, illustrating steps below.
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+
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Use Labkey->iraemmBrowser module. The `Patients` section lets you select the patient
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and corresponding visit. On `Load` the data gets loaded from the server.
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@@ -85,4 +91,6 @@ in the `anonymization.py` and run it with `runPython.sh anonymization.py`.
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[nibabel]: https://nipy.org/nibabel/gettingstarted.html
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[labkeyInterface]: http://wiscigt.powertheword.com/andrej.studen/labkeyInterface
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[Orthanc]:https://www.orthanc-server.com
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-[orthancInterface]: http://wiscigt.powertheword.com/andrej.studen/orthancinterface
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+[orthancInterface]: http://wiscigt.powertheword.com/andrej.studen/orthancinterface
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+[iraeMMWorkflow]: https://med1.fmf.uni-lj.si/owncloud/index.php/s/wrKOo1iUzgePzTi
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+[iraeMMInstallation]: https://med1.fmf.uni-lj.si/owncloud/index.php/s/pAe4NBONHOGgEYO
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