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@@ -1,96 +0,0 @@
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-import os
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-import json
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-import re
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-import sys
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-
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-
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-fhome=os.path.expanduser('~')
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-sys.path.insert(1,fhome+'/software/src/labkeyInterface')
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-import labkeyInterface
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-import labkeyDatabaseBrowser
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-
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-sys.path.insert(1,fhome+'/software/src/orthancInterface')
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-import orthancInterface
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-import orthancDatabaseBrowser
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-
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-fconfig=os.path.join(fhome,'.labkey','network.json')
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-
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-net=labkeyInterface.labkeyInterface()
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-net.init(fconfig)
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-db=labkeyDatabaseBrowser.labkeyDB(net)
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-
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-
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-onet=orthancInterface.orthancInterface()
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-onet.init(fconfig)
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-odb=orthancDatabaseBrowser.orthancDB(onet)
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-
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-i=0
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-project='Orthanc/Database'
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-
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-patients=odb.getPatients()
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-
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-for p in patients:
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- pdata=odb.getPatientData(p)
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- dicom=pdata['MainDicomTags']
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- patientId=dicom['PatientID']
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-
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- print("Patient: {} ID: {}".format(p,patientId))
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-
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- qfilter={'variable':'PatientId','value':patientId,'oper':'eq'}
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- ds=db.selectRows(project,'study','Demographics',[qfilter])
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- if len(ds['rows'])==0:
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- row={}
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- row['PatientId']=patientId
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- row['birthDate']=dicom['PatientBirthDate']
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- row['PatientName']=dicom['PatientName']
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- row['OrthancId']=p
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- db.modifyRows('insert',project,'study','Demographics',[row])
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-
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- for s in pdata['Studies']:
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- sdata=odb.getStudyData(s)
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- sdicom=sdata['MainDicomTags']
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- sid=sdicom['StudyInstanceUID']
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- print('Study: {}/{}'.format(s,sid))
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- #print('Data: {}'.format(sdata))
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- sdate=sdicom['StudyDate']
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- #continue
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-
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-
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- for se in sdata['Series']:
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-
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- qfilter={'variable':'orthancSeries','value':se,'oper':'eq'}
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- ds=db.selectRows(project,'study','Imaging',[qfilter])
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- if len(ds['rows'])>0:
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- continue
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-
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- #count existing entries for patient
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- qfilter={'variable':'PatientId','value':patientId,'oper':'eq'}
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- ds=db.selectRows(project,'study','Imaging',[qfilter])
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- seqNum=len(ds['rows'])
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-
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- sedata=odb.getSeriesData(se)
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- sedicom=sedata['MainDicomTags']
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- seid=sedicom['SeriesInstanceUID']
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- print('Series: {}/{}'.format(se,seid))
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- #print('Data: {}'.format(sedata))
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- seDesc="NONE"
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- try:
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- seDesc=sedicom['SeriesDescription']
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- except KeyError:
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- pass
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-
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- print('ID: {}.'.format(seDesc))
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-
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- row={}
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- row['PatientId']=patientId
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- row['sequenceNum']=seqNum
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- row['dicomStudy']=sid
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- row['orthancStudy']=s
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- row['dicomSeries']=seid
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- row['orthancSeries']=se
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- row['studyDate']=sdate
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- row['seriesDescription']=seDesc
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- db.modifyRows('insert',project,'study','Imaging',[row])
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-
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-
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-print("Done")
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NIX User