 Andrej Studen/Merlin
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bf94d54099
Merged to head, currently, concrete path is specified in segmentation/test/testConfig.cfg.template, should be replace by generic paths
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%!s(int64=3) %!d(string=hai) anos |
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Andrej Studen/Merlin
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07a1e15517
Adding missed configuration files
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%!s(int64=3) %!d(string=hai) anos |
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Andrej Studen/Merlin
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bf82421965
Adding redirect to testConfig.cfg.template
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%!s(int64=3) %!d(string=hai) anos |
 NIX User
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45062e572d
Adding verbosity in populateImagingFromTransferList
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%!s(int64=3) %!d(string=hai) anos |
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NIX User
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23b4d03e1e
Merge branch 'master' of wiscigt.powertheword.com:oil/iraemm
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%!s(int64=3) %!d(string=hai) anos |
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NIX User
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56800cacc0
Skipping images already resolved in populateImagingFromTransferList
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%!s(int64=3) %!d(string=hai) anos |
 Andrej Studen
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e452adcbb8
Adding recent scripts, particularly generateFigures.py and updates to segmentationIRAEMM_ONKO.json
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%!s(int64=3) %!d(string=hai) anos |
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Andrej Studen
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d18ee3ff86
Correcting spelling error
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%!s(int64=3) %!d(string=hai) anos |
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Andrej Studen
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c7f8174426
Adding organ_percentile calculation, runs with segmentation.json
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%!s(int64=3) %!d(string=hai) anos |
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Andrej Studen
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60021e7a8e
Adding script use in nnUNet on IRAEMM images
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%!s(int64=3) %!d(string=hai) anos |
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Andrej Studen
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fc25bd8249
Merge branch 'master' of wiscigt.powertheword.com:oil/iraemm
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%!s(int64=3) %!d(string=hai) anos |
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Andrej Studen
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0cb3f65861
Adding comments and redirecting gzip to setup.json indicated binary in preprocess.py
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%!s(int64=3) %!d(string=hai) anos |
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Andrej Studen
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425922f219
Adding comments to runSegmentationnnUNet.py
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%!s(int64=3) %!d(string=hai) anos |
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NIX User
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1cb816f9f9
Merge to core
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%!s(int64=3) %!d(string=hai) anos |
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NIX User
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daba75cfbe
Adding preprocessing template
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%!s(int64=3) %!d(string=hai) anos |
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NIX User
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e480f09ed5
Adding -u and flag to runPython
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%!s(int64=3) %!d(string=hai) anos |
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NIX User
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7df6a921f2
Updating populateImageFromTransferList to update failureStatus
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%!s(int64=3) %!d(string=hai) anos |
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NIX User
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d027e88d51
Adding findCandidatesForSchedule.py
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%!s(int64=3) %!d(string=hai) anos |
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Andrej Studen
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f1c4e7b732
Adding un-buffer flag to python for uptodate output
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%!s(int64=3) %!d(string=hai) anos |
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Andrej Studen
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083ed06079
Changing to nixWrapper
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%!s(int64=3) %!d(string=hai) anos |
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Andrej Studen
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ab22d0e9bf
Splitting runPython.sh to runPythonnnUNet.sh to use with nnUNet code
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%!s(int64=3) %!d(string=hai) anos |
 Andrej Studen
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9ae439d111
Adding segmentation configuration files
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%!s(int64=3) %!d(string=hai) anos |
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Andrej Studen
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4d0276ab7b
Have runPython.sh run within venv, nnUnet set
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%!s(int64=3) %!d(string=hai) anos |
 Andrej
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cdb79e7b12
Removing saved_models from irAEMM project (moving it to irAEMMSegmentationModels project)
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%!s(int64=3) %!d(string=hai) anos |
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Andrej
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43c785d716
Adding test.py script
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%!s(int64=3) %!d(string=hai) anos |
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Andrej
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90b4734ea6
Adding iypnb jupyter scripts for database manipulation
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%!s(int64=3) %!d(string=hai) anos |
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Andrej
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14346cae34
minor changes to default parameter values in segmentation.json.sample
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%!s(int64=3) %!d(string=hai) anos |
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Andrej
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7610919def
Moving saved_models to irAEMMSegmentationModels project
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%!s(int64=3) %!d(string=hai) anos |
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Andrej
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1bdf95612e
Adding automated segmentation script
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%!s(int64=3) %!d(string=hai) anos |
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Andrej
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8a8b58d515
Adding default view as segmentationReview
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%!s(int64=4) %!d(string=hai) anos |
