 Andrej Studen
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cba44a449a
Debugged version of DM for series production
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vor 1 Jahr |
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Andrej Studen
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05b5533727
updated segmentation query entry form to match nnUNET
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vor 1 Jahr |
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Andrej Studen
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c87c6e3cc1
Realinging runSegmentationDM to use nixWrapper to load dependencies
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vor 1 Jahr |
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Andrej Studen
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f50a92ad9c
Expanding analysis to additional segmentations in organ_percentile
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vor 2 Jahren |
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Andrej Studen
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5c691d080a
Adding copyAnonymizedDataset.py
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vor 2 Jahren |
 NIX User
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f045cc682d
Correcting a dangling if clause in populateImagingFromTransferList.py
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vor 2 Jahren |
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NIX User
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de0c3210bc
Merge branch 'master' of https://git0.fmf.uni-lj.si/studen/iraemm
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vor 2 Jahren |
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NIX User
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de0e000713
Correcting populateImagingFromTransferList to post studyDate to labkey
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vor 2 Jahren |
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Andrej Studen
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bbed7b3e28
Merge branch 'master' of https://git0.fmf.uni-lj.si/studen/irAEMM
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vor 3 Jahren |
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Andrej Studen
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04a1454e76
Robustifying for missing images, mismatches, etc.
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vor 3 Jahren |
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NIX User
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d4e0acb3ef
Allow populateImaging to detect not only missing images, but multiple matches as well. Signaled by empty CT/PET_orthancId and lines in missingImages
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vor 3 Jahren |
 Andrej
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572caa77de
Merge to head
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vor 3 Jahren |
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Andrej
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1520c0e04d
Adding configuration files
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vor 3 Jahren |
 Andrej Studen
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e50b84a2f2
Merge branch 'master' of https://git0.fmf.uni-lj.si/studen/iraemm
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vor 3 Jahren |
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Andrej Studen
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95e8ceafb2
Adding templates
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vor 3 Jahren |
 Andrej Studen/Merlin
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fd919a26ca
Merge branch 'master' of ssh://git0.fmf.uni-lj.si:2222/studen/iraemm
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vor 3 Jahren |
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Andrej Studen/Merlin
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bf94d54099
Merged to head, currently, concrete path is specified in segmentation/test/testConfig.cfg.template, should be replace by generic paths
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vor 3 Jahren |
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Andrej Studen/Merlin
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07a1e15517
Adding missed configuration files
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vor 3 Jahren |
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Andrej Studen/Merlin
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bf82421965
Adding redirect to testConfig.cfg.template
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vor 3 Jahren |
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Andrej Studen
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957b0c2fff
Updates to automatic routines
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vor 3 Jahren |
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NIX User
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45062e572d
Adding verbosity in populateImagingFromTransferList
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vor 3 Jahren |
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NIX User
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23b4d03e1e
Merge branch 'master' of wiscigt.powertheword.com:oil/iraemm
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vor 3 Jahren |
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NIX User
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56800cacc0
Skipping images already resolved in populateImagingFromTransferList
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vor 3 Jahren |
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Andrej Studen
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e452adcbb8
Adding recent scripts, particularly generateFigures.py and updates to segmentationIRAEMM_ONKO.json
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vor 3 Jahren |
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Andrej Studen
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d18ee3ff86
Correcting spelling error
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vor 3 Jahren |
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Andrej Studen
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c7f8174426
Adding organ_percentile calculation, runs with segmentation.json
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vor 3 Jahren |
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Andrej Studen
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60021e7a8e
Adding script use in nnUNet on IRAEMM images
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vor 3 Jahren |
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Andrej Studen
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fc25bd8249
Merge branch 'master' of wiscigt.powertheword.com:oil/iraemm
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vor 3 Jahren |
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Andrej Studen
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0cb3f65861
Adding comments and redirecting gzip to setup.json indicated binary in preprocess.py
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vor 3 Jahren |
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Andrej Studen
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425922f219
Adding comments to runSegmentationnnUNet.py
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vor 3 Jahren |
