 Andrej Studen/Merlin
|
fd919a26ca
Merge branch 'master' of ssh://git0.fmf.uni-lj.si:2222/studen/iraemm
|
3 years ago |
|
Andrej Studen/Merlin
|
bf94d54099
Merged to head, currently, concrete path is specified in segmentation/test/testConfig.cfg.template, should be replace by generic paths
|
3 years ago |
|
Andrej Studen/Merlin
|
07a1e15517
Adding missed configuration files
|
3 years ago |
|
Andrej Studen/Merlin
|
bf82421965
Adding redirect to testConfig.cfg.template
|
3 years ago |
 Andrej Studen
|
957b0c2fff
Updates to automatic routines
|
3 years ago |
 NIX User
|
45062e572d
Adding verbosity in populateImagingFromTransferList
|
3 years ago |
|
NIX User
|
23b4d03e1e
Merge branch 'master' of wiscigt.powertheword.com:oil/iraemm
|
3 years ago |
|
NIX User
|
56800cacc0
Skipping images already resolved in populateImagingFromTransferList
|
3 years ago |
 Andrej Studen
|
e452adcbb8
Adding recent scripts, particularly generateFigures.py and updates to segmentationIRAEMM_ONKO.json
|
3 years ago |
|
Andrej Studen
|
d18ee3ff86
Correcting spelling error
|
3 years ago |
|
Andrej Studen
|
c7f8174426
Adding organ_percentile calculation, runs with segmentation.json
|
3 years ago |
|
Andrej Studen
|
60021e7a8e
Adding script use in nnUNet on IRAEMM images
|
3 years ago |
|
Andrej Studen
|
fc25bd8249
Merge branch 'master' of wiscigt.powertheword.com:oil/iraemm
|
3 years ago |
|
Andrej Studen
|
0cb3f65861
Adding comments and redirecting gzip to setup.json indicated binary in preprocess.py
|
3 years ago |
|
Andrej Studen
|
425922f219
Adding comments to runSegmentationnnUNet.py
|
3 years ago |
|
NIX User
|
1cb816f9f9
Merge to core
|
3 years ago |
|
NIX User
|
daba75cfbe
Adding preprocessing template
|
3 years ago |
|
NIX User
|
e480f09ed5
Adding -u and flag to runPython
|
3 years ago |
|
NIX User
|
7df6a921f2
Updating populateImageFromTransferList to update failureStatus
|
3 years ago |
|
NIX User
|
d027e88d51
Adding findCandidatesForSchedule.py
|
3 years ago |
|
Andrej Studen
|
f1c4e7b732
Adding un-buffer flag to python for uptodate output
|
3 years ago |
|
Andrej Studen
|
083ed06079
Changing to nixWrapper
|
3 years ago |
|
Andrej Studen
|
ab22d0e9bf
Splitting runPython.sh to runPythonnnUNet.sh to use with nnUNet code
|
3 years ago |
|
Andrej Studen
|
9ae439d111
Adding segmentation configuration files
|
3 years ago |
|
Andrej Studen
|
4d0276ab7b
Have runPython.sh run within venv, nnUnet set
|
3 years ago |
 Andrej
|
cdb79e7b12
Removing saved_models from irAEMM project (moving it to irAEMMSegmentationModels project)
|
3 years ago |
|
Andrej
|
43c785d716
Adding test.py script
|
3 years ago |
|
Andrej
|
90b4734ea6
Adding iypnb jupyter scripts for database manipulation
|
3 years ago |
|
Andrej
|
14346cae34
minor changes to default parameter values in segmentation.json.sample
|
3 years ago |
|
Andrej
|
7610919def
Moving saved_models to irAEMMSegmentationModels project
|
3 years ago |
