 Andrej Studen @ VBOX
|
7dad40c53c
Removing minor errors in NPZ routines
|
6 months ago |
|
Andrej Studen @ VBOX
|
984655eb1a
Adding python routines for NPZ coding and decoding
|
6 months ago |
|
Andrej Studen @ VBOX
|
7d32a10f56
AIQ verified version of NPZ generation
|
6 months ago |
|
Andrej Studen @ VBOX
|
dcf17fa4b8
Adding script to generate anonymized numpy files out of DICOMS from orthanc
|
6 months ago |
 Andrej Studen
|
6ddf9fcc67
Adding entry filter to allow for selection in processing, also, debug parameter in template stops processing after the first entry
|
1 year ago |
|
Andrej Studen
|
ed88df579b
Adding debug to template to set processing to debug mode (eg. to stop processing after the first entry
|
1 year ago |
|
Andrej Studen
|
b778cea967
Adding entryFilter to template, set to empty to select all entries. entryFilter can be overloaded via parameterOverload element of analysisModule lists
|
1 year ago |
|
Andrej Studen
|
688b491289
Adding site specific __[setup:paths]softwareSrc__ replace pattern to allow for site specific path to software
|
1 year ago |
|
Andrej Studen
|
0ea84c60d5
Changing README to md format, allowing pre-configured path for model in testConfig
|
1 year ago |
|
Andrej Studen
|
cba44a449a
Debugged version of DM for series production
|
1 year ago |
|
Andrej Studen
|
05b5533727
updated segmentation query entry form to match nnUNET
|
1 year ago |
|
Andrej Studen
|
c87c6e3cc1
Realinging runSegmentationDM to use nixWrapper to load dependencies
|
1 year ago |
|
Andrej Studen
|
f50a92ad9c
Expanding analysis to additional segmentations in organ_percentile
|
1 year ago |
|
Andrej Studen
|
5c691d080a
Adding copyAnonymizedDataset.py
|
1 year ago |
 NIX User
|
f045cc682d
Correcting a dangling if clause in populateImagingFromTransferList.py
|
2 years ago |
|
NIX User
|
de0c3210bc
Merge branch 'master' of https://git0.fmf.uni-lj.si/studen/iraemm
|
2 years ago |
|
NIX User
|
de0e000713
Correcting populateImagingFromTransferList to post studyDate to labkey
|
2 years ago |
|
Andrej Studen
|
bbed7b3e28
Merge branch 'master' of https://git0.fmf.uni-lj.si/studen/irAEMM
|
2 years ago |
|
Andrej Studen
|
04a1454e76
Robustifying for missing images, mismatches, etc.
|
2 years ago |
|
NIX User
|
d4e0acb3ef
Allow populateImaging to detect not only missing images, but multiple matches as well. Signaled by empty CT/PET_orthancId and lines in missingImages
|
2 years ago |
 Andrej
|
572caa77de
Merge to head
|
2 years ago |
|
Andrej
|
1520c0e04d
Adding configuration files
|
2 years ago |
 Andrej Studen
|
e50b84a2f2
Merge branch 'master' of https://git0.fmf.uni-lj.si/studen/iraemm
|
2 years ago |
|
Andrej Studen
|
95e8ceafb2
Adding templates
|
2 years ago |
|
Andrej Studen/Merlin
|
fd919a26ca
Merge branch 'master' of ssh://git0.fmf.uni-lj.si:2222/studen/iraemm
|
2 years ago |
|
Andrej Studen/Merlin
|
bf94d54099
Merged to head, currently, concrete path is specified in segmentation/test/testConfig.cfg.template, should be replace by generic paths
|
2 years ago |
|
Andrej Studen/Merlin
|
07a1e15517
Adding missed configuration files
|
2 years ago |
|
Andrej Studen/Merlin
|
bf82421965
Adding redirect to testConfig.cfg.template
|
2 years ago |
|
Andrej Studen
|
957b0c2fff
Updates to automatic routines
|
2 years ago |
|
NIX User
|
45062e572d
Adding verbosity in populateImagingFromTransferList
|
2 years ago |
