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пре 4 година | |
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dicomUtils | пре 4 година | |
pythonScripts | пре 4 година | |
slicerModule | пре 4 година | |
README.md | пре 4 година | |
setup.json.template | пре 4 година |
Manage images and data related to irAE project.
Download the code and dependencies. Unzip. To
have Slicer know where the files are, open Slicer, and under Edit->Application settings
select Modules section. Under Paths, click on Add and navigate to newly unzipped
directories. We need labkeyBrowser
and DICOMtools
from SlcierLabkeyExtension
and
slicerModule
from iraeMM
code. After clicking OK
, Slicer will and has to
be restarted.
To access LabKey, the Slicer tools must be configured. Do that by selecting LabKey->labkeyBrowser module from module list and fill appropriate fields.
For accessing OIL internal site, the settings are:
To access LabKey, the python API was used. Anonymization and NIfTI conversion are based on phenomenal nibabel tools. Data storage is provided by Orthanc with associated interface.
Anonymization must be run as a tomcat8
user for access to data files. Check setup
in the anonymization.py
and run it with runPython.sh anonymization.py
.