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irAEMM
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irAEMM
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pythonScripts
Andrej Studen 9ae439d111 Adding segmentation configuration files 3 gadi atpakaļ
..
README 53fb46eaa9 Updating to recent version 4 gadi atpakaļ
addSegmentations.py 3dec2cb5da Update add segmentations 4 gadi atpakaļ
anonymizeImages.py ae65c9190e Updates 4 gadi atpakaļ
anonymizeImagesNIfTI.py 53fb46eaa9 Updating to recent version 4 gadi atpakaļ
anonymizeSegmentations.py 05fa966798 Recent updates 3 gadi atpakaļ
copyAnonymizedDataset.py 1f7661b703 Adding database management routines 4 gadi atpakaļ
copyAnonymizedImagesToOrthanc.py 1f7661b703 Adding database management routines 4 gadi atpakaļ
copyToOrthanc.py 1fd9314ca6 Initial import 4 gadi atpakaļ
fillClinicalDataInternational.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation 3 gadi atpakaļ
getImages.py 1fd9314ca6 Initial import 4 gadi atpakaļ
iraemmUploadTestPatients.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation 3 gadi atpakaļ
makeAnonymizeLinks.py 1fd9314ca6 Initial import 4 gadi atpakaļ
makeAnonymizedDataset.py 1f7661b703 Adding database management routines 4 gadi atpakaļ
modifyPatients.py 1f7661b703 Adding database management routines 4 gadi atpakaļ
populateImagingFromOrthanc.py 07478c6846 Making populateImagingFromOrthance.py use Analysis/Run infrastructure 4 gadi atpakaļ
populateImagingFromTransferList.py 05fa966798 Recent updates 3 gadi atpakaļ
preprocess.py d23fdfb3fd Updating preprocess.py 4 gadi atpakaļ
runPython.sh 4d0276ab7b Have runPython.sh run within venv, nnUnet set 3 gadi atpakaļ
runSegmentationDM.py 9ae439d111 Adding segmentation configuration files 3 gadi atpakaļ
runSegmentationnnUNet.py 9ae439d111 Adding segmentation configuration files 3 gadi atpakaļ
test.py 43c785d716 Adding test.py script 3 gadi atpakaļ

README

Run with ./runPython.sh script.py