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irAEMM
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Andrej Studen/Merlin b986ecdaba Adding path template for site configuration 4 vuotta sitten
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slicerModule 67ef22559c Adding irAEMMBrowser 4 vuotta sitten
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setup.json.template b986ecdaba Adding path template for site configuration 4 vuotta sitten

README.md

Immunotherapy related adverse effects toolbox

Manage images and data related to irAE project.

Dependencies

To access LabKey, the python API was used. Anonymization and NIfTI conversion are based on phenomenal nibabel tools. Data storage is provided by Orthanc with associated interface.

Usage

Anonymization must be run as a tomcat8 user for access to data files. Check setup in the anonymization.py and run it with runPython.sh anonymization.py.