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Andrej Studen/Merlin dcaa6b0dad Make preprocess.py depend on setup.json for path initialization for wider portability il y a 4 ans
dicomUtils ae65c9190e Updates il y a 4 ans
pythonScripts dcaa6b0dad Make preprocess.py depend on setup.json for path initialization for wider portability il y a 4 ans
slicerModule 67ef22559c Adding irAEMMBrowser il y a 4 ans
README.md 6e3bae70d9 Update README.md il y a 5 ans
setup.json.template b986ecdaba Adding path template for site configuration il y a 4 ans

README.md

Immunotherapy related adverse effects toolbox

Manage images and data related to irAE project.

Dependencies

To access LabKey, the python API was used. Anonymization and NIfTI conversion are based on phenomenal nibabel tools. Data storage is provided by Orthanc with associated interface.

Usage

Anonymization must be run as a tomcat8 user for access to data files. Check setup in the anonymization.py and run it with runPython.sh anonymization.py.