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irAEMM
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Andrej Studen f1c4e7b732 Adding un-buffer flag to python for uptodate output %!s(int64=4) %!d(string=hai) anos
..
README 53fb46eaa9 Updating to recent version %!s(int64=5) %!d(string=hai) anos
addSegmentations.py 3dec2cb5da Update add segmentations %!s(int64=4) %!d(string=hai) anos
anonymizeImages.py ae65c9190e Updates %!s(int64=5) %!d(string=hai) anos
anonymizeImagesNIfTI.py 53fb46eaa9 Updating to recent version %!s(int64=5) %!d(string=hai) anos
anonymizeSegmentations.py 05fa966798 Recent updates %!s(int64=4) %!d(string=hai) anos
copyAnonymizedDataset.py 1f7661b703 Adding database management routines %!s(int64=5) %!d(string=hai) anos
copyAnonymizedImagesToOrthanc.py 1f7661b703 Adding database management routines %!s(int64=5) %!d(string=hai) anos
copyToOrthanc.py 1fd9314ca6 Initial import %!s(int64=5) %!d(string=hai) anos
fillClinicalDataInternational.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation %!s(int64=4) %!d(string=hai) anos
getImages.py 1fd9314ca6 Initial import %!s(int64=5) %!d(string=hai) anos
iraemmUploadTestPatients.ipynb 90b4734ea6 Adding iypnb jupyter scripts for database manipulation %!s(int64=4) %!d(string=hai) anos
makeAnonymizeLinks.py 1fd9314ca6 Initial import %!s(int64=5) %!d(string=hai) anos
makeAnonymizedDataset.py 1f7661b703 Adding database management routines %!s(int64=5) %!d(string=hai) anos
modifyPatients.py 1f7661b703 Adding database management routines %!s(int64=5) %!d(string=hai) anos
populateImagingFromOrthanc.py 07478c6846 Making populateImagingFromOrthance.py use Analysis/Run infrastructure %!s(int64=4) %!d(string=hai) anos
populateImagingFromTransferList.py 05fa966798 Recent updates %!s(int64=4) %!d(string=hai) anos
preprocess.py 083ed06079 Changing to nixWrapper %!s(int64=4) %!d(string=hai) anos
runPython.sh ab22d0e9bf Splitting runPython.sh to runPythonnnUNet.sh to use with nnUNet code %!s(int64=4) %!d(string=hai) anos
runPythonnnUNet.sh f1c4e7b732 Adding un-buffer flag to python for uptodate output %!s(int64=4) %!d(string=hai) anos
runSegmentationDM.py 9ae439d111 Adding segmentation configuration files %!s(int64=4) %!d(string=hai) anos
runSegmentationnnUNet.py 9ae439d111 Adding segmentation configuration files %!s(int64=4) %!d(string=hai) anos
test.py 43c785d716 Adding test.py script %!s(int64=4) %!d(string=hai) anos

README

Run with ./runPython.sh script.py