irAEMM/pythonScripts/test.py

import sys
import os
import json

def main(parameterFile):
    fhome=os.path.expanduser('~')
    fsetup=os.path.join(fhome,'.labkey','setup.json')
    with open(fsetup) as f:
        setup=json.load(f)
    print('SETUP')
    print(setup)

    sys.path.append(setup['paths']['nixWrapper'])
    import nixWrapper
    nixWrapper.loadLibrary('labkeyInterface')

    import labkeyInterface
    import labkeyDatabaseBrowser

    print('Loaded labkeyInterface')

    with open(parameterFile) as f:
        pars=json.load(f)

    print('Parameters')
    print(pars)

    return 0

def testLJUData(parameterFile):
    fhome=os.path.expanduser('~')
    fsetup=os.path.join(fhome,'.labkey','setup.json')
    with open(fsetup) as f:
        setup=json.load(f)

    sys.path.append(setup['paths']['labkeyInterface'])
    import labkeyInterface
    import labkeyDatabaseBrowser

    net=labkeyInterface.labkeyInterface()
    fconfig=os.path.join(fhome,'.labkey','network.json')
    net.init(fconfig)

    with open(parameterFile) as f:
        pars=json.load(f)
    
    id=net.getUserId()  
    print('User id: {}'.format(id))
    db=labkeyDatabaseBrowser.labkeyDB(net)

    fv={'PatientId':'NIX-LJU-D2002-IRAE-A011',
            'visitCode':'VISIT_0',
            'ModifiedBy':str(id)}

    fv={'ModifiedBy':str(id)}
    filters=[{'variable':v,'value':fv[v],'oper':'eq'} for v in fv]
    ds=db.selectRows(pars['project'],pars['schemaName'],pars['queryName'],filters)
    
    for r in ds['rows']:
        print(r)
    print('here')
    return 0


if __name__=="__main__":
    main(sys.argv[1])