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irAEMM
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Andrej Studen/Merlin f4eaa26542 Adding updates to segmentation 4 yıl önce
dicomUtils ae65c9190e Updates 4 yıl önce
pythonScripts f4eaa26542 Adding updates to segmentation 4 yıl önce
slicerModule 67ef22559c Adding irAEMMBrowser 4 yıl önce
README.md 6e3bae70d9 Update README.md 4 yıl önce
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README.md

Immunotherapy related adverse effects toolbox

Manage images and data related to irAE project.

Dependencies

To access LabKey, the python API was used. Anonymization and NIfTI conversion are based on phenomenal nibabel tools. Data storage is provided by Orthanc with associated interface.

Usage

Anonymization must be run as a tomcat8 user for access to data files. Check setup in the anonymization.py and run it with runPython.sh anonymization.py.