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+# Labkey as a docker container
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+
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+This git project contains everything required to start labkey as a docker container.
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+
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+## Installation
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+
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+### Prepare
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+
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+- Install [`docker`][docker] and [`docker-compose`][dockerCompose]
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+- create a user `labkey` with `docker` privileges
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+```bash
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+sudo adduser labkey
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+sudo -G docker labkey
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+```
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+- clone the software directly into home
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+```bash
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+sudo su labkey
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+git init .
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+git remote add origin <repository-url>
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+git pull origin master
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+```
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+- run `bin/installLabkey.sh 22.3` to unzip the enclosed LabKey binary code and make appropriate links.
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+- copy `bin/env.sh.sample` to `bin/env.sh` and set a secret `$PGPASS`, other settings are probably OK,
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+ check `$DOCKERCOMPOSE`
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+- set the same value as `password` in `labkey/labkey.yml`
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+
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+### Start containers
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+
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+Run `bin/startLabkey.sh`. This will do several things:
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+ - Download PostgreSQL image and initialize a persistent database at `~/postgresl/data`.
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+ - Build a combined tomcat/R image from a recent version of tomcat
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+ - Copy and link files from home to the server
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+ - Start the server
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+
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+### Check the installation
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+
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+In principle, the service should be running at `http://localhost:8443/labkey`. Check output of inidividual
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+ components by:
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+
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+```bash
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+ docker logs config-db-1
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+ docker logs config-web-1
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+ docker exec -it config-db-1 bash
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+```
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+
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+### Expected errors
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+
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+Errors of the type `500: Unexpected server error` are common and related
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+
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+[docker]: https://docs.docker.com/engine/install/centos/
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+[dockerCompose]: https://docs.docker.com/compose/install/
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NIX software