FROM tomcat:9-jdk11-temurin-jammy

RUN apt-get update && apt-get install -y sudo;
RUN update-ca-certificates && \
   wget --no-parent https://download.java.net/java/GA/jdk13.0.1/cec27d702aa74d5a8630c65ae61e4305/9/GPL/openjdk-13.0.1_linux-x64_bin.tar.gz && \
   tar xvzf openjdk-13.0.1_linux-x64_bin.tar.gz -C /opt/java && \
   mv /opt/java/openjdk /opt/java/openjdk-11 && \
   ln -s /opt/java/jdk-13.0.1 /opt/java/openjdk

ARG RKEY=https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc 
ARG GPGKEY=/etc/apt/trusted.gpg.d/cran_ubuntu_key.asc 
RUN apt-get update && apt-get install -y \
		dirmngr \
        	gnupg \
		apt-transport-https \
		ca-certificates \
		software-properties-common \
	&& wget -qO- $RKEY | sudo tee -a $GPGKEY\
	&& add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/"\
	&& apt-get update --fix-missing\
	&& apt-get install -y r-base \
	&& apt-get install -y git \
	&& apt-get install -y libcurl4-openssl-dev libxml2-dev libssl-dev libfontconfig1-dev  libharfbuzz-dev libfribidi-dev libtiff5-dev git \
	&& rm -rf /var/lib/apt/lists/* 


RUN R -e 'install.packages(c("devtools","ggplot2","Rlabkey","ggsurvfit","ggalluvial","gridExtra","comprehenr","ggsci","paletteer","tidyverse","swimplot","gtsummary"))'


LABEL "name"="labkey19"