labkeyDocker/bin/installLabkey.sh

#!/bin/bash

:x

LABKEY=LabKey22.3.2-3-community

if [ $# -gt 0 ] ; 
then
	case $1 in
	18.1)
		LABKEY=LabKey18.1-57017.17-professional-bin;;
	18.3)
		LABKEY=LabKey18.3.3-62784.7-community-bin;;
	20.7)
		LABKEY=LabKey20.7.8-66016.22-community-bin;;
	21.1)
		LABKEY=LabKey21.11.10-11-community;;
	esac;

fi;

echo "Using $LABKEY";

SFW_SRC=$HOME/software/packages/$LABKEY.tar.gz
LABKEY_BASE=$HOME/labkey
SFW_DIR=$HOME/software/src

if [ ! -d $LABKEY_BASE ] ; 
then
	mkdir $LABKEY_BASE;
fi;

CFG_DIR=$HOME/config
LABKEY_DIR=$SFW_DIR/$LABKEY;

LINK_DIRS=("tomcat-lib" "labkeywebapp" "modules" "pipeline-lib")

if [ ! -d ${LABKEY_DIR} ] ; then
  	cd ${SFW_DIR};
  	tar xvzf ${SFW_SRC};
  	echo "Using distribution in ${LABKEY_DIR}";
fi;

for d in ${LINK_DIRS[@]} ; 
do
	  if [ -L ${LABKEY_BASE}/$d ] ;
	  then
		  rm ${LABKEY_BASE}/$d;
	  fi;
	  ln -s ${LABKEY_DIR}/$d ${LABKEY_BASE}/$d;
done;