| 123456789101112131415161718192021222324252627282930313233343536 |
- FROM tomcat:9-jdk17-temurin-jammy
- RUN apt-get update && apt-get install -y sudo;
- ARG RKEY=https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc
- ARG GPGKEY=/etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
- RUN apt-get update && apt-get install -y \
- dirmngr \
- gnupg \
- apt-transport-https \
- ca-certificates \
- software-properties-common \
- && wget -qO- $RKEY | sudo tee -a $GPGKEY\
- && add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/"\
- && apt-get update --fix-missing\
- && apt-get install -y r-base \
- && apt-get install -y git \
- && apt-get install -y libcurl4-openssl-dev libxml2-dev libssl-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libtiff5-dev git \
- && rm -rf /var/lib/apt/lists/*
- #run this as root!
- #RUN mkdir -p /home/labkey/R/site-library \
- # && export R_LIBS=/home/labkey/R/site-library \
- # && echo ${R_LIBS} \
- RUN R -e 'install.packages("devtools")' \
- && R -e 'install.packages("ggplot2")' \
- && R -e 'install.packages("Rlabkey")' \
- && R -e 'install.packages("ggsurvfit")' \
- && R -e 'install.packages("ggalluvial")' \
- && R -e 'install.packages("gridExtra")' \
- && R -e 'install.packages("comprehenr")' \
- && R -e 'install.packages("ggsci")' \
- && R -e 'install.packages("paletteer")' \
- && R -e 'install.packages("tidyverse")'\
- && R -e 'install.packages("swimplot")'\
- && R -e 'install.packages("gtsummary")'
|
