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- FROM tomcat:9-jdk11-temurin-jammy
- RUN apt-get update && apt-get install -y sudo;
- RUN update-ca-certificates && \
- wget --no-parent https://download.java.net/java/GA/jdk14.0.2/205943a0976c4ed48cb16f1043c5c647/12/GPL/openjdk-14.0.2_linux-x64_bin.tar.gz && \
- tar xvzf openjdk-14.0.2_linux-x64_bin.tar.gz -C /opt/java && \
- mv /opt/java/openjdk /opt/java/openjdk-11 && \
- ln -s /opt/java/jdk-14.0.2 /opt/java/openjdk
- ARG RKEY=https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc
- ARG GPGKEY=/etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
- RUN apt-get update && apt-get install -y \
- dirmngr \
- gnupg \
- apt-transport-https \
- ca-certificates \
- software-properties-common \
- && wget -qO- $RKEY | sudo tee -a $GPGKEY\
- && add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/"\
- && apt-get update --fix-missing\
- && apt-get install -y r-base \
- && apt-get install -y git \
- && apt-get install -y libcurl4-openssl-dev libxml2-dev libssl-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libtiff5-dev git \
- && rm -rf /var/lib/apt/lists/*
- RUN R -e 'install.packages("devtools")' \
- && R -e 'install.packages("ggplot2")' \
- && R -e 'install.packages("Rlabkey")' \
- && R -e 'install.packages("ggsurvfit")' \
- && R -e 'install.packages("ggalluvial")' \
- && R -e 'install.packages("gridExtra")' \
- && R -e 'install.packages("comprehenr")' \
- && R -e 'install.packages("ggsci")' \
- && R -e 'install.packages("paletteer")' \
- && R -e 'install.packages("tidyverse")'\
- && R -e 'install.packages("swimplot")'\
- && R -e 'install.packages("gtsummary")'
- LABEL "name"="labkey20"
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