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Andrej 638406421a Adding idField to change default ParticipantId to an alternative labkey field, particularly usefule when updating lists rather than datasets hace 10 meses
pythonScripts 8f98e4ce97 Minor changes to testInterface hace 2 años
LICENSE 623fedc366 Add LICENSE hace 5 años
Readme.md c4fd57f4c6 Update Readme.md hace 6 años
config.py d8248b091c Adding scripts that create a default network setup file hace 1 año
getCSRF.py e892554ee8 adding missing getCSRF.py hace 6 años
getFile.py fbad6ad2e6 Initial import hace 6 años
importXLSX.py 638406421a Adding idField to change default ParticipantId to an alternative labkey field, particularly usefule when updating lists rather than datasets hace 10 meses
labkeyDatabaseBrowser.py 28114bd6f0 Prefering utf8 in parsing response for labkeyDatabaseBrowser hace 1 año
labkeyFileBrowser.py 9c2df6384c Repairng readFileToBuffer hace 5 años
labkeyInterface.py a576a3bb48 Making OSError more verbose in labkeyInterface hace 2 años
network-config-sample.json fbad6ad2e6 Initial import hace 6 años

Readme.md

Labkey Python interface

A Python3 urllib3 based interface for communication with the LabKey server. Update over official LabKey version is the use of client certificates to access potentially sensitive sites.

Setup

Update network-config-sample.json with personal information needed to access the site (certificates, keys, username and password) When using labkeyInterface, use the updated file as input to labkeyInterface constructor, ie

ifc=labkeyInterface.labkeyInterface('/path/to/network-config.json')

Use

getFile.py illustrates use to connect to site, collect image and perform image analysis.

Generate private key without password

To connect, a key without password is needed for compliance with urllib3. Generate it with:

openssl rsa -in [file1.key] -out [file2.key]