studen/labkeyInterface @ ecb8d2d2e09f27e3a9b393d0b698b30e3d371f0a

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Andrej ecb8d2d2e0 Adding updateEntry function to set values to fields that can be computed from other fields in entry		10 月之前
pythonScripts	8f98e4ce97 Minor changes to testInterface	2 年之前
LICENSE	623fedc366 Add LICENSE	5 年之前
Readme.md	c4fd57f4c6 Update Readme.md	6 年之前
config.py	d8248b091c Adding scripts that create a default network setup file	1 年之前
getCSRF.py	e892554ee8 adding missing getCSRF.py	6 年之前
getFile.py	fbad6ad2e6 Initial import	6 年之前
importXLSX.py	ecb8d2d2e0 Adding updateEntry function to set values to fields that can be computed from other fields in entry	10 月之前
labkeyDatabaseBrowser.py	28114bd6f0 Prefering utf8 in parsing response for labkeyDatabaseBrowser	1 年之前
labkeyFileBrowser.py	9c2df6384c Repairng readFileToBuffer	5 年之前
labkeyInterface.py	a576a3bb48 Making OSError more verbose in labkeyInterface	2 年之前
network-config-sample.json	fbad6ad2e6 Initial import	6 年之前

Labkey Python interface

A Python3 urllib3 based interface for communication with the LabKey server. Update over official LabKey version is the use of client certificates to access potentially sensitive sites.

Setup

Update network-config-sample.json with personal information needed to access the site (certificates, keys, username and password) When using labkeyInterface, use the updated file as input to labkeyInterface constructor, ie

ifc=labkeyInterface.labkeyInterface('/path/to/network-config.json')

Use

getFile.py illustrates use to connect to site, collect image and perform image analysis.

Generate private key without password

To connect, a key without password is needed for compliance with urllib3. Generate it with:

openssl rsa -in [file1.key] -out [file2.key]

Readme.md

Labkey Python interface

Setup

Use

Generate private key without password