Rounding nvoxels to nearest integer, adding ERROR to lines reporting difficulties with upload, and reporting segmentation dataset when in getSegmentations for statUtils.py

pythonScripts/statUtils.py

@@ -66,6 +66,7 @@ def getImage(setup, row, field, extraPath=None):
 
 def getSegmentations(setup,row):
     segName=setup.get('segmentationDataset','Segmentations')
+    print(f'Using segmentation dataset {segName}')
     idField=setup['idField']
     visitField=setup['visitField']
     qFilter=[{'variable':x,'value':row[x],'oper':'eq'} for x in [idField,visitField]]
@@ -156,7 +157,7 @@ def getCOM(vals):
     return vals['diagnostics_Mask-original_CenterOfMassIndex']
 
 def getNVoxels(vals):
-    return drop_array(vals['original_shape_VoxelVolume']/8)
+    return round(drop_array(vals['original_shape_VoxelVolume']/8))
 
 def getValue(vals,valueName):
     if valueName=='SUVmean':
@@ -239,7 +240,7 @@ def updateDatasetRows(db,project,dataset,rows,filterVars=['ParticipantId','Seque
         #encoding=chardet.detect(resp)['encoding']
         #respJSON=json.loads(resp.decode(encoding))
         try:
-            print(resp['exception'])
+            print('[ERROR]: {}'.format(resp['exception']))
             print(f'Using mode={mode}')
         except KeyError:
             pass