venv

Installation of virtual environments

After cloning, virtual environment with python3 needs to be created - in this file, only requiremnets for virutal environments can be found.

Create virtual environment with python3 and requirements file:

Labkey venv

virtualenv ~/venv/labkey -p python3
source ~/venv/labkey/bin/activate
pip install -r requirements.txt

nnUNet venv

virtualenv ~/venv/nnUNet -p python3
source ~/venv/nnUNet/activate
pip install ~/software/src/venv/nnUNet/requirements.txt
pip3 install torch torchvision torchaudio --extra-index-url https://download.pytorch.org/whl/cu113
pip install nnunet

Socket venv More detailed instructions for virtual environment socket can be found here