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@@ -118,9 +118,9 @@ end
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%% -----===== Save geometry files =====-----
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waitbar(2/total_num_steps, hWaitbar, 'Step 3: Save geometry files');
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-% patient_dir = uifile('getdir', 'Save the patient data to directory');
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+patient_dir = uifile('getdir', 'Save the patient data to directory');
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% !!! Grozomah
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-patient_dir = 'C:\010-work\003_localGit\WiscPlan_v2\data\PatientData';
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+% patient_dir = 'C:\010-work\003_localGit\WiscPlan_v2\data\PatientData';
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% make directories
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mkdir(patient_dir);
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@@ -130,6 +130,8 @@ mkdir(fullfile(patient_dir, 'matlab_files'));
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mkdir(fullfile(patient_dir, 'opt_input'));
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mkdir(fullfile(patient_dir, 'opt_output'));
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+Geometry.patient_dir = patient_dir;
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+
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waitbar(2.33/total_num_steps, hWaitbar, 'Step 3: Save matlab geometry files');
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% Save matlab geometry file
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save(fullfile(patient_dir, 'matlab_files', 'Geometry.mat'), 'Geometry');
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