WiscPlan_v2/WiscPlanPhotonkV125/matlab_frontend/fullRO_beamCalc.m

function fullRO_beamCalc(Geometry)
% this function will ask for an OptGoal file, and an exit folder, and will
% then create a beamlet set for each of the scenarios specified in the
% OptGoals.
% It will also append the path to the OptGoal file

% choose the OptGoal file
[Obj_file,Obj_path,indx] = uigetfile([Geometry.patient_dir '\matlab_files\*.mat'], 'Select OptGoal file' );
if Obj_file == 0
   disp('no file selected, aborting')
   return
end
path2goal = [Obj_path, Obj_file];
load(path2goal);

% choose the folder for new beamlets
beamlet_dir = uigetdir([Geometry.patient_dir ], 'Make and select new beamlet folder' );
if beamlet_dir == 0
   disp('no file selected, aborting')
   return
end
OptGoals.fullRO_beamlet_dir = beamlet_dir;

%% start the modified beamlet calc
% num_batches = helicalDosecalcSetup7_fullRO(Geometry.patient_dir, OptGoals, beamlet_dir)
% num_batches = helicalDosecalcSetup7(Geometry.patient_dir)
% num_batches = helicalDosecalcSetup8(Geometry.patient_dir)
helicalDosecalcSetup7_fullRO(Geometry.patient_dir, OptGoals, beamlet_dir)

% save the appended optGoal file
save(path2goal, 'OptGoals');

end