DCIS

DCIS

A project to investigate long term impact of heart irraditaion in breast cancer.

Slicer

This project relates on Slicer. I am using SlicerLabkeyExtension codes to run Slicer on a headless server. Codes in slicerScripts are run via

SlicerLabkeyExtension/slicerScripts/runSlicer.sh [thisProject]/slicerScripts/parseDicom.py config.json

If you are not using headless servers, X is not a problem, and one can run via

Slicer --no-main-window --python-scripts [thisProject]/slicerScripts/parseDicom.py config.json

Slicer notes

Code was tested on Slicer-5.4.0-linux-amd64 with SlicerRT.

Labkey

Based on Labkey database server using labkeyInterface.

Orthanc

Depends on orthancInterface. Orthanc is an open source PACS implementation.