studen/orthancInterface

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Andrej 9cb487a8d2 Adding a raw argument to getDicomField to avoid conversion of binary data'		1 month ago
pythonScripts	f13644aaa3 Adding networkConfig flag to setup will use other server as the one specified in network.json. File named in networkConfig should exist in .labkey directory of the user executing the script	1 year ago
scripts	2e857b9a2e updating moveDicom	7 months ago
LICENSE	9d2c9199e2 Add LICENSE	3 years ago
Readme.md	10f0554ab8 Update Readme.md	4 years ago
network-config-sample.json	ac9c7730f7 Update network-config-sample.json	4 years ago
orthancDatabaseBrowser.py	9cb487a8d2 Adding a raw argument to getDicomField to avoid conversion of binary data'	1 month ago
orthancFileBrowser.py	404538e450 Updates	3 years ago
orthancInterface.py	fdca6cabcf Merge to head	3 years ago

Orthanc Python interface

A Python3 urllib3 based interface for communication with the Orthanc server. Provides simple REST API interfaces integrated in python code.

Setup

Update network-config-sample.json with personal information needed to access the site (username and password) When using orthancInterface, use the updated file as input to orthancInterface constructor, ie

ifc=orthancInterface.orthancInterface('/path/to/network-config.json')

Orthanc configuration file can be merged with the LabKeyInterface configuration file.

Use

Sample usage:

fhome=os.path.expanduser('~')
fconfig=os.path.join(fhome,'.labkey','network.json')
onet=orthancInterface.orthancInterface()
onet.init(fconfig)
ofb=orthancFileBrowser.orthancFileBrowser(onet)
...
#download seriesId to fname
ofb.getZip('series',seriesId,fname)

#upload dicom file
ofb.upload('/path/to/file.dcm')

Readme.md

Orthanc Python interface

Setup

Use