@@ -1,3 +1,14 @@
### Instructions ###
Look at `clusterAnalysis.ipynb' for a step by step algorithm.
+
+The only required files for analysis are:
+- ../slicerScripts/convertToNRRD.py
+- analysis.py
+- segmentation.py
+- getData.py
+- config.py
+- segmentation.ipynb
+- clusterAnalysis.ipynb
+The rest are for backup only.
@@ -0,0 +1,13 @@
+import os
+import sys
+import json
+import pathlib
+import slicer
+def main(configFile):
+ node=slicer.vtkMRMLScalarVolumeNode()
+if __name__=='__main__':
+ main(sys.argv[1])
+ quit()