 Andrej Studen@Labkey-KNM
|
7f7c5fe190
Clearing merge conflicts
|
1 year ago |
 Andrej
|
8b606a3b56
Cleaning up listCreatedFiles in workflow
|
1 year ago |
|
Andrej
|
012848dc66
Adding regularization to compartment fits
|
1 year ago |
|
Andrej
|
ad99d7cd50
Recent updates
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
5bffcfe431
Cleared error from getData updateStatus, making sure that status is also checked for entries with converted images
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
eea087869e
Correcting typo in convertToNRRD
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
a0af1ed42c
Moving plotSegmentation from segmentation.py to plotData to avoid matplotlib dependency in Slicer, through convertToNRRD.py which depends on segmentation.py
|
1 year ago |
|
Andrej
|
3c277a73dc
dealing with improperly set rows in convertToNRDD.py
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
fa3491d025
Adding code-word NONE to variable names to be excluded from filtering; previously, literal value NONE would be sought
|
1 year ago |
|
Andrej
|
5cb119b5ff
Optimization hyperparameter lambda setting illustration for regularizing on IVF parameter A
|
1 year ago |
|
Andrej
|
504c2ae9db
Adding port from matlab fitting to python fitting, new python code based on global optimization with lambda adjusted regularizer
|
1 year ago |
|
Andrej
|
bf13fea75b
Compact way to generate values for the fits in matlab
|
1 year ago |
|
Andrej
|
52c2ff00fa
Slight changes in assingFromDate and changing from getSeries to setSeries in assignOrthancStudy.ipynb
|
1 year ago |
|
Andrej
|
f845223d25
Resolving merge errors in getData.py
|
1 year ago |
|
Andrej
|
e098801656
Cosmetic changes to fitCenters
|
1 year ago |
|
Andrej
|
8d8c79e32b
Updating analysis.py to work with modified version of segmentation.py
|
1 year ago |
|
Andrej
|
aca8e9e402
Resolving merging mismatches
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
985248eb9f
Changing loops in doPixelAnalysis
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
a4028e9849
Minor corrections to doAnalysis
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
86ae324590
Adding IVF plot of fits to batch of files to be stored in database
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
a65f79315e
Adjusting to NRRD based segmentations
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
b83c9bf7f6
getData to handle potential subdirectory at remote location
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
18e26aadd9
Adding quit to generateCenters
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
032bbc54b8
Correcting fit functions to use delays, in some rare conditions non-offseted time values were still used
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
285e42984e
Adding ploting of IVF fits in fitCentersIVF
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
71be3a9b0f
Preventing fitCenters to generate plots of fits
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
74028781c2
Changing extractCenters to layout with first column for region index; multiple entries can be made for a single region
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
85cf688137
Adding matlab scripts to handle nrrd segmentations
|
1 year ago |
|
Andrej Studen@Labkey-KNM
|
338139ad91
Finishing matlab scripts with quit statement to prevent hangs on matlab completion
|
1 year ago |
|
Andrej
|
9fb3643710
Adapting pixel analysis to nrrd segmentation files
|
1 year ago |
