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dynamicSPECT
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pythonScripts
NIX Worker 8d56a9f074 Rearranging scripts to do IO and parse config 1 rok temu
..
README.md bbe9982a4c Adding test.py slicer script 1 rok temu
analysis.py e3c0099dab Making analysis run matlab scripts directly 1 rok temu
analyze.ipynb 9941f28c57 Adding convertToNRRD.py script 2 lat temu
calculateK1.ipynb 1440d682a0 Adding scripts 3 lat temu
clusterAnalysis.ipynb 034e09bc30 Modified notebooks 2 lat temu
clusterAnalysisLeftovers.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. 2 lat temu
config.py 8d56a9f074 Rearranging scripts to do IO and parse config 1 rok temu
downloadPatient.py 1440d682a0 Adding scripts 3 lat temu
generateCenters.ipynb fde4aa8d47 Up to generate centers, including matlab files 2 lat temu
getData.py 8d56a9f074 Rearranging scripts to do IO and parse config 1 rok temu
parseDicom.py 9941f28c57 Adding convertToNRRD.py script 2 lat temu
pixelAnalysis.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. 2 lat temu
plotK1.ipynb 9941f28c57 Adding convertToNRRD.py script 2 lat temu
plotPolar.ipynb c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022. 2 lat temu
plotViews.ipynb 1440d682a0 Adding scripts 3 lat temu
segmentation.ipynb 034e09bc30 Modified notebooks 2 lat temu
segmentation.py 8f169c6170 Moving segmentation functions from notebook to package 2 lat temu
selectCenters.ipynb 1440d682a0 Adding scripts 3 lat temu
statAnalysis.ipynb 1440d682a0 Adding scripts 3 lat temu
table.ipynb 1440d682a0 Adding scripts 3 lat temu
vtkInterface.py 9941f28c57 Adding convertToNRRD.py script 2 lat temu

README.md

Instructions

Look at `clusterAnalysis.ipynb' for a step by step algorithm.

The only required files for analysis are:

  • ../slicerScripts/convertToNRRD.py
  • analysis.py
  • segmentation.py
  • getData.py
  • config.py
  • segmentation.ipynb
  • clusterAnalysis.ipynb

The rest are for backup only.