studen/dynamicSPECT @ 26556c4d35adfa04bfd3efe0a1e44a3626c29168

NIX Worker 8d56a9f074 Rearranging scripts to do IO and parse config		1 год назад
..
README.md	bbe9982a4c Adding test.py slicer script	1 год назад
analysis.py	e3c0099dab Making analysis run matlab scripts directly	1 год назад
analyze.ipynb	9941f28c57 Adding convertToNRRD.py script	2 лет назад
calculateK1.ipynb	1440d682a0 Adding scripts	3 лет назад
clusterAnalysis.ipynb	034e09bc30 Modified notebooks	2 лет назад
clusterAnalysisLeftovers.ipynb	c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022.	2 лет назад
config.py	8d56a9f074 Rearranging scripts to do IO and parse config	1 год назад
downloadPatient.py	1440d682a0 Adding scripts	3 лет назад
generateCenters.ipynb	fde4aa8d47 Up to generate centers, including matlab files	2 лет назад
getData.py	8d56a9f074 Rearranging scripts to do IO and parse config	1 год назад
parseDicom.py	9941f28c57 Adding convertToNRRD.py script	2 лет назад
pixelAnalysis.ipynb	c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022.	2 лет назад
plotK1.ipynb	9941f28c57 Adding convertToNRRD.py script	2 лет назад
plotPolar.ipynb	c317e06d8d Version that produced results sent in email to Luka, Oct 28th 2022.	2 лет назад
plotViews.ipynb	1440d682a0 Adding scripts	3 лет назад
segmentation.ipynb	034e09bc30 Modified notebooks	2 лет назад
segmentation.py	8f169c6170 Moving segmentation functions from notebook to package	2 лет назад
selectCenters.ipynb	1440d682a0 Adding scripts	3 лет назад
statAnalysis.ipynb	1440d682a0 Adding scripts	3 лет назад
table.ipynb	1440d682a0 Adding scripts	3 лет назад
vtkInterface.py	9941f28c57 Adding convertToNRRD.py script	2 лет назад

Instructions

Look at `clusterAnalysis.ipynb' for a step by step algorithm.

The only required files for analysis are:

../slicerScripts/convertToNRRD.py
analysis.py
segmentation.py
getData.py
config.py
segmentation.ipynb
clusterAnalysis.ipynb

The rest are for backup only.

README.md

Instructions